CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALCH (Fructose-1,6-bisphosphatase class 1 OS=Salmonella choleraesuis GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALAR (Fructose-1,6-bisphosphatase class 1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALA4 (Fructose-1,6-bisphosphatase class 1 OS=Salmonella agona (strain SL483) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SACD2 (Fructose-1,6-bisphosphatase class 1 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fbp PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.936e-13
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNID 596
            +  T++KLDV+SN++    L ++     +ASEEED  VA      G Y+V FDPLDGSSNID
Sbjct:   53 QGETQKKLDVISNDILKASLAANSNVLALASEEEDNVVAANAG--GRYVVAFDPLDGSSNID 112

HSP 2 Score: 36.965 bits (84), Expect = 1.936e-13
Identity = 19/44 (43.18%), Postives = 26/44 (59.09%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +L  V+ SI  ACK IA  VQ   ++ + G   + NVQGE QK+
Sbjct:   16 DLQEVIFSIELACKDIAKKVQLGALAGVLGATESENVQGETQKK 59

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PERMH (Fructose-1,6-bisphosphatase class 1 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.936e-13
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD +SN V    L  SG+   +ASEE + PV   +     Y++ FDPLDGSSNID  VS G
Sbjct:   67 QKLDELSNTVMLQHLLDSGQFYALASEELNEPVYSHKGKDARYVIAFDPLDGSSNIDVNVSIG 129

HSP 2 Score: 39.6614 bits (91), Expect = 1.936e-13
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 2

Query:  251 LTNWLLKQEQSGV-IDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGED 421
            L  ++L++E+        L++ L +I +A K IAS V+ AG++++ G  G VNVQGE+
Sbjct:    8 LNRFILEEERKHPSASGSLSLALMAIESAAKIIASHVRMAGLADVLGQAGKVNVQGEE 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BORA1 (Fructose-1,6-bisphosphatase class 1 OS=Bordetella avium (strain 197N) GN=fbp PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.511e-13
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+        G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGEVQKKLDVLSNEILLEANEWGGHLAAMASEEMETIHRIPNRYPKGEYLLLFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 40.0466 bits (92), Expect = 2.511e-13
Identity = 20/63 (31.75%), Postives = 39/63 (61.90%), Query Frame = 2

Query:  245 ETLTNWLLKQEQSG-VIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +TLT +L++Q++S   +  E+ +++  ++ ACK I+  V +  +  + G   + NVQGE QK+
Sbjct:    4 KTLTQYLVEQQRSAQALAPEVRLLIEVVARACKAISHAVGKGALGGVLGSLESENVQGEVQKK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_FLAPJ (Fructose-1,6-bisphosphatase class 1 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=fbp PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.512e-13
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAV---EESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV +NE+F   L +      IASEE D  + V   + S++  Y+V+ DPLDGSSNID  VS G
Sbjct:   66 QQKLDVYANEIFIQTLINREIVCGIASEENDDFITVAGSDNSHNNKYVVLMDPLDGSSNIDVNVSVG 132

HSP 2 Score: 41.2022 bits (95), Expect = 2.512e-13
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 2

Query:  245 ETLTNWLLKQEQSGVIDA-ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +TL  ++++ +QS    + EL+ +++SI  A K +   V +AG+ ++ G  G  N+QGEDQ++
Sbjct:    6 KTLGEFIIENQQSFQYSSGELSRIINSIRLAAKVVNYKVNKAGLVDIVGAAGEQNIQGEDQQK 68

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ERWT9 (Fructose-1,6-bisphosphatase class 1 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fbp PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.512e-13
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 3

Query:  429 KLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            KLD+ +NE     L++ G    IASEEED  V  E   +G Y+V+ DPLDGSSNID  VS G
Sbjct:   64 KLDLYANEKLKAALKARGIVAGIASEEEDEIVIFEGVENGKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 35.8094 bits (81), Expect = 2.512e-13
Identity = 20/62 (32.26%), Postives = 34/62 (54.84%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQ 424
            ++TL  +++ KQ        ELT ++S+I    K I   + +AG+ ++ G  G  N+QGE Q
Sbjct:    1 MKTLGEFIVEKQHDFPHATGELTALISAIKLGAKIIHRDINKAGLVDILGASGVENIQGEQQ 62

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SHIFL (Fructose-1,6-bisphosphatase class 1 OS=Shigella flexneri GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SHIF8 (Fructose-1,6-bisphosphatase class 1 OS=Shigella flexneri serotype 5b (strain 8401) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_SALCH	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALAR	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALA4	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SACD2	1.936e-13	48.39	Fructose-1,6-bisphosphatase class 1 OS=Saccharopha...	[more]
F16PA_PERMH	1.936e-13	47.62	Fructose-1,6-bisphosphatase class 1 OS=Persephonel...	[more]
F16PA_BORA1	2.511e-13	42.03	Fructose-1,6-bisphosphatase class 1 OS=Bordetella ...	[more]
F16PA_FLAPJ	2.512e-13	46.27	Fructose-1,6-bisphosphatase class 1 OS=Flavobacter...	[more]
F16PA_ERWT9	2.512e-13	51.61	Fructose-1,6-bisphosphatase class 1 OS=Erwinia tas...	[more]
F16PA_SHIFL	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Shigella fl...	[more]
F16PA_SHIF8	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Shigella fl...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT