CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SHIDS (Fructose-1,6-bisphosphatase class 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SHIBS (Fructose-1,6-bisphosphatase class 1 OS=Shigella boydii serotype 4 (strain Sb227) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SHIB3 (Fructose-1,6-bisphosphatase class 1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOUT (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli (strain UTI89 / UPEC) GN=fbp PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOSM (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOLI (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli (strain K12) GN=fbp PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOLC (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOL6 (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O6 GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOL5 (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOK1 (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O1:K1 / APEC GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_SHIDS	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Shigella dy...	[more]
F16PA_SHIBS	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Shigella bo...	[more]
F16PA_SHIB3	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Shigella bo...	[more]
F16PA_ECOUT	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOSM	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOLI	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOLC	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOL6	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOL5	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECOK1	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT