CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECOHS (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O9:H4 (strain HS) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECODH (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli (strain K12 / DH10B) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECO5E (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECO57 (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O157:H7 GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ECO24 (Fructose-1,6-bisphosphatase class 1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CITK8 (Fructose-1,6-bisphosphatase class 1 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fbp PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.512e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 2.512e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CHLT3 (Fructose-1,6-bisphosphatase class 1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=fbp PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.259e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEE-EDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +NE F+  +   GR  ++ASEE ED+ +   + Y G Y+++FDPLDGSSNIDA VS G
Sbjct:   66 KKLDLFANEQFTKAIGHHGRFAVMASEENEDIILPPLDKY-GKYVLLFDPLDGSSNIDANVSVG 128

HSP 2 Score: 34.2686 bits (77), Expect = 3.259e-13
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            E T +L  ++ A K +   V RAG+ ++ G  G+ NVQGE+ K+
Sbjct:   24 EFTKLLYDVAFAAKLVYRHVVRAGLVDILGSAGSTNVQGEEVKK 67

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ANAVT (Fructose-1,6-bisphosphatase class 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fbp PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.498e-13
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYS-GNYIVVFDPLDGSSNIDAAVSTG 614
            +K+DV +N+VF +  + SG    +ASEE D P  + E+   G Y +++DP+DGSSN D  +S G
Sbjct:   87 KKMDVYANDVFISVFKQSGLVCRLASEEMDEPYYIPENCPVGRYTLLYDPIDGSSNTDTNLSLG 150

HSP 2 Score: 40.4318 bits (93), Expect = 5.498e-13
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 2

Query:  215 ATKKRSSYEIETLTNWLLKQEQSGVIDAE-LTIVLSSISTACKQIASLVQRAGI-SNLTGIQGAVNVQGEDQKE 430
            +T K    +  TL+  +L+Q QS   DA+ L+ +++ I+ A K +A  + RAG+   + G  G VNVQGE  K+
Sbjct:   15 STDKALDRDCTTLSRHVLQQLQSFSADAQDLSALMNRIALAGKLVARRLSRAGLMEGVLGFTGEVNVQGESVKK 88

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ANASP (Fructose-1,6-bisphosphatase class 1 OS=Anabaena sp. (strain PCC 7120) GN=fbp PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.498e-13
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYS-GNYIVVFDPLDGSSNIDAAVSTG 614
            +K+DV +N+VF +  + SG    +ASEE D P  + E+   G Y +++DP+DGSSN D  +S G
Sbjct:   87 KKMDVYANDVFISVFKQSGLVCRLASEEMDEPYYIPENCPIGRYTLLYDPIDGSSNTDTNLSLG 150

HSP 2 Score: 40.4318 bits (93), Expect = 5.498e-13
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 2

Query:  215 ATKKRSSYEIETLTNWLLKQEQSGVIDAE-LTIVLSSISTACKQIASLVQRAGI-SNLTGIQGAVNVQGEDQKE 430
            +T K    +  TL+  +L+Q QS   DA+ L+ +++ I+ A K +A  + RAG+   + G  G VNVQGE  K+
Sbjct:   15 STDKALDRDCTTLSRHVLQQLQSFSADAQDLSALMNRIALAGKLVARRLSRAGLMEGVLGFTGEVNVQGESVKK 88

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CHLPD (Fructose-1,6-bisphosphatase class 1 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=fbp PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.506e-13
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +N+   N +   GR  I+ SEE D  +   ++ +G+Y ++FDPLDGSSNID  VS G
Sbjct:   65 KKLDLFANDKIINAIGQHGRFAIMGSEENDGIIIPPKNETGSYALLFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 35.8094 bits (81), Expect = 5.506e-13
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ELT +L+ ++ A K +   V RAG+ ++ G  G  N+QGE  K+
Sbjct:   23 ELTDLLNDVAFAAKLVRREVVRAGLVDILGFTGDTNIQGEQVKK 66

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_ECOHS	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECODH	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECO5E	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECO57	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_ECO24	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Escherichia...	[more]
F16PA_CITK8	2.512e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Citrobacter...	[more]
F16PA_CHLT3	3.259e-13	50.00	Fructose-1,6-bisphosphatase class 1 OS=Chloroherpe...	[more]
F16PA_ANAVT	5.498e-13	42.19	Fructose-1,6-bisphosphatase class 1 OS=Anabaena va...	[more]
F16PA_ANASP	5.498e-13	42.19	Fructose-1,6-bisphosphatase class 1 OS=Anabaena sp...	[more]
F16PA_CHLPD	5.506e-13	44.44	Fructose-1,6-bisphosphatase class 1 OS=Chlorobium ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT