CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_XANC8 (Fructose-1,6-bisphosphatase class 1 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.262e-16
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SN++        G     ASEE D    V + Y SG+++++FDPLDGSSNID  VS G
Sbjct:   59 QGEAQKKLDVLSNDILLEANAWGGHLAACASEEMDHSQPVPDQYPSGDFLLLFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 49.6766 bits (117), Expect = 1.262e-16
Identity = 23/61 (37.70%), Postives = 40/61 (65.57%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +LT +L++++ +G ID EL  +++ +S ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 SLTRFLIEEQHAGRIDPELRQLITIVSRACKRISIAVSKGALGGVLGDAGTGNVQGEAQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEAE (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas aeruginosa GN=fbp PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.771e-16
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+       +G    +ASEE D P  +   Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   59 QGEVQKKLDVMSNEILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 45.8246 bits (107), Expect = 2.771e-16
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEAB (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fbp PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.771e-16
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+       +G    +ASEE D P  +   Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   59 QGEVQKKLDVMSNEILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 45.8246 bits (107), Expect = 2.771e-16
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEA8 (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas aeruginosa (strain LESB58) GN=fbp PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.771e-16
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+       +G    +ASEE D P  +   Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   59 QGEVQKKLDVMSNEILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 45.8246 bits (107), Expect = 2.771e-16
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEA7 (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas aeruginosa (strain PA7) GN=fbp PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.771e-16
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+       +G    +ASEE D P  +   Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   59 QGEVQKKLDVMSNEILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 45.8246 bits (107), Expect = 2.771e-16
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16A1_LEPCP (Fructose-1,6-bisphosphatase class 1 1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=fbp1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.083e-16
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNEV        G    +ASEE D    V   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   61 QGEVQKKLDIISNEVLIEANEWGGHLAAMASEEMDSIHVVPNRYPQGEYMLLFDPLDGSSNIDVNVSIG 129

HSP 2 Score: 46.9802 bits (110), Expect = 6.083e-16
Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +LT +L++Q+ Q G I A+L +++  ++ ACK+IA  V +  +  + G  G+ NVQGE QK+
Sbjct:    6 SLTQFLVEQQRQHGRIPAQLRLLIEVVARACKRIAISVNKGALGEVLGSAGSENVQGEVQKK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_NEIM0 (Fructose-1,6-bisphosphatase class 1 OS=Neisseria meningitidis serogroup C (strain 053442) GN=fbp PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.092e-16
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV++N +  + L+++     +ASEEED  V+  E+  G Y+V+FDPLDGSSNID  +S G
Sbjct:   61 QKKLDVIANNIMIDTLKANPAVAGLASEEEDTFVSAGEN--GRYLVLFDPLDGSSNIDVNISVG 122

HSP 2 Score: 43.5134 bits (101), Expect = 6.092e-16
Identity = 22/63 (34.92%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  242 IETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TLT +L +  Q   +   L  VL S+ +AC +I + V+   ++ + G+ G  N+QGEDQK+
Sbjct:    1 MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGALAGVLGMTGTGNIQGEDQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_NEIG2 (Fructose-1,6-bisphosphatase class 1 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=fbp PE=3 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 6.092e-16
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV++N +  + L+++     +ASEEED  V+  E+  G Y+V+FDPLDGSSNID  +S G
Sbjct:   61 QKKLDVIANNIMIDTLKANPAVAGLASEEEDTFVSAGEN--GRYLVLFDPLDGSSNIDVNISVG 122

HSP 2 Score: 43.5134 bits (101), Expect = 6.092e-16
Identity = 22/63 (34.92%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  242 IETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TLT +L +  Q   +   L  VL S+ +AC +I + V+   ++ + G+ G  N+QGEDQK+
Sbjct:    1 MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGALAGVLGMAGTGNIQGEDQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_NEIG1 (Fructose-1,6-bisphosphatase class 1 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=fbp PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.092e-16
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV++N +  + L+++     +ASEEED  V+  E+  G Y+V+FDPLDGSSNID  +S G
Sbjct:   61 QKKLDVIANNIMIDTLKANPAVAGLASEEEDTFVSAGEN--GRYLVLFDPLDGSSNIDVNISVG 122

HSP 2 Score: 43.5134 bits (101), Expect = 6.092e-16
Identity = 22/63 (34.92%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  242 IETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TLT +L +  Q   +   L  VL S+ +AC +I + V+   ++ + G+ G  N+QGEDQK+
Sbjct:    1 MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGALAGVLGMAGTGNIQGEDQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_NEIMB (Fructose-1,6-bisphosphatase class 1 OS=Neisseria meningitidis serogroup B GN=fbp PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.918e-16
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV++N +  + L+++     +ASEEED  V   E+  G Y+V+FDPLDGSSNID  +S G
Sbjct:   61 QKKLDVIANNIMIDTLKANSAVAGLASEEEDTFVNAGEN--GRYLVLFDPLDGSSNIDVNISVG 122

HSP 2 Score: 43.5134 bits (101), Expect = 7.918e-16
Identity = 22/63 (34.92%), Postives = 38/63 (60.32%), Query Frame = 2

Query:  242 IETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TLT +L +  Q   +   L  VL S+ +AC +I + V+   ++ + G+ G  N+QGEDQK+
Sbjct:    1 MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGALAGVLGMAGTGNIQGEDQKK 63

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_XANC8	1.262e-16	43.48	Fructose-1,6-bisphosphatase class 1 OS=Xanthomonas...	[more]
F16PA_PSEAE	2.771e-16	46.38	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16PA_PSEAB	2.771e-16	46.38	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16PA_PSEA8	2.771e-16	46.38	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16PA_PSEA7	2.771e-16	46.38	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16A1_LEPCP	6.083e-16	44.93	Fructose-1,6-bisphosphatase class 1 1 OS=Leptothri...	[more]
F16PA_NEIM0	6.092e-16	46.88	Fructose-1,6-bisphosphatase class 1 OS=Neisseria m...	[more]
F16PA_NEIG2	6.092e-16	46.88	Fructose-1,6-bisphosphatase class 1 OS=Neisseria g...	[more]
F16PA_NEIG1	6.092e-16	46.88	Fructose-1,6-bisphosphatase class 1 OS=Neisseria g...	[more]
F16PA_NEIMB	7.918e-16	46.88	Fructose-1,6-bisphosphatase class 1 OS=Neisseria m...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT