CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CHLCH (Fructose-1,6-bisphosphatase class 1 OS=Chlorobium chlorochromatii (strain CaD3) GN=fbp PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.412e-14
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +NE   + + + GR  ++ SEE +  +    + SGNY+++FDPLDGSSNID  VS G
Sbjct:   66 KKLDLFANEQIISAIGAHGRFAVMGSEENEEIIIPTNNESGNYVLLFDPLDGSSNIDVNVSVG 128

HSP 2 Score: 38.891 bits (89), Expect = 1.412e-14
Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ELT +L+ ++ A K +   V RAG+ ++ G+ G+ NVQGE+ K+
Sbjct:   24 ELTDLLTDVAFAAKLVRREVVRAGLVDILGLAGSTNVQGEEVKK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEPF (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=fbp PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.834e-14
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+        G    +ASEE D    +   Y  G Y++VFDPLDGSSNID     G
Sbjct:   59 QGEVQKKLDVLSNEILLEANEWGGHLAGMASEEMDNAYQIPGKYPKGAYLLVFDPLDGSSNIDINAPVG 127

HSP 2 Score: 46.595 bits (109), Expect = 1.834e-14
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK+I+  V +  +  + G  G  NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSNNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SODGM (Fructose-1,6-bisphosphatase class 1 OS=Sodalis glossinidius (strain morsitans) GN=fbp PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.835e-14
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   + KLD+ +NE     L++ G+   IASEEED  V  E   +G Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQMKLDLFANEKLKAALKARGQVAGIASEEEDEIVVFEGVENGKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 37.3502 bits (85), Expect = 1.835e-14
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQ 424
            ++TL  +++ KQ        ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q
Sbjct:    1 MKTLGEFIVEKQHDFPHATGELTALLSAIKLGAKIIHRDINKAGLVDILGTSGAENVQGEVQ 62

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PROA2 (Fructose-1,6-bisphosphatase class 1 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=fbp PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.835e-14
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +NE   N +   GR  ++ SEE +  +    + +G YI++FDPLDGSSNID  VS G
Sbjct:   66 KKLDLFANEKIINAIGEHGRFALMGSEENEGTIIPPNNDTGRYILLFDPLDGSSNIDVNVSVG 128

HSP 2 Score: 40.4318 bits (93), Expect = 1.835e-14
Identity = 20/58 (34.48%), Postives = 36/58 (62.07%), Query Frame = 2

Query:  257 NWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++L +Q+       ELT +L+ ++ A K +   V RAG++++ G+ G  NVQGE+ K+
Sbjct:   10 HFLEQQKSHPEATGELTDLLNDVAFAAKLVRREVVRAGLADILGMAGTTNVQGEEVKK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ACIBY (Fructose-1,6-bisphosphatase class 1 OS=Acinetobacter baumannii (strain AYE) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.836e-14
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV+SN+   + L+     G +ASEE D     +E+  G Y+V+FDPLDGSSNID  +  G
Sbjct:   57 QGETQKKLDVISNDYLIDALKVHPHVGGLASEELDDFTPAQEN--GEYLVLFDPLDGSSNIDINMCVG 122

HSP 2 Score: 42.743 bits (99), Expect = 1.836e-14
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L  Q++ G +  EL  V+ +I+  CK I   +Q+  ++ + G  G  NVQGE QK+
Sbjct:    5 TLSQFL--QQEKGNLTPELAQVIDTIAATCKTIDQALQKGALAGILGSAGNENVQGETQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ACIBT (Fructose-1,6-bisphosphatase class 1 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fbp PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.836e-14
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV+SN+   + L+     G +ASEE D     +E+  G Y+V+FDPLDGSSNID  +  G
Sbjct:   57 QGETQKKLDVISNDYLIDALKVHPHVGGLASEELDDFTLAQEN--GEYLVLFDPLDGSSNIDINMCVG 122

HSP 2 Score: 42.743 bits (99), Expect = 1.836e-14
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L  Q++ G +  EL  V+ +I+  CK I   +Q+  ++ + G  G  NVQGE QK+
Sbjct:    5 TLSQFL--QQEKGNLTPELAQVIDTIAATCKTIDQALQKGALAGILGSAGNENVQGETQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ACIBS (Fructose-1,6-bisphosphatase class 1 OS=Acinetobacter baumannii (strain SDF) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.836e-14
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV+SN+   + L+     G +ASEE D     +E+  G Y+V+FDPLDGSSNID  +  G
Sbjct:   57 QGETQKKLDVISNDYLIDALKVHPHVGGLASEELDDFTPAQEN--GEYLVLFDPLDGSSNIDINMCVG 122

HSP 2 Score: 42.743 bits (99), Expect = 1.836e-14
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L  Q++ G +  EL  V+ +I+  CK I   +Q+  ++ + G  G  NVQGE QK+
Sbjct:    5 TLSQFL--QQEKGNLTPELAQVIDTIAATCKTIDQALQKGALAGILGSAGNENVQGETQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ACIBC (Fructose-1,6-bisphosphatase class 1 OS=Acinetobacter baumannii (strain ACICU) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.836e-14
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV+SN+   + L+     G +ASEE D     +E+  G Y+V+FDPLDGSSNID  +  G
Sbjct:   57 QGETQKKLDVISNDYLIDALKVHPHVGGLASEELDDFTPAQEN--GEYLVLFDPLDGSSNIDINMCVG 122

HSP 2 Score: 42.743 bits (99), Expect = 1.836e-14
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L  Q++ G +  EL  V+ +I+  CK I   +Q+  ++ + G  G  NVQGE QK+
Sbjct:    5 TLSQFL--QQEKGNLTPELAQVIDTIAATCKTIDQALQKGALAGILGSAGNENVQGETQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16A1_RALEH (Fructose-1,6-bisphosphatase class 1 1 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=fbp1 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.383e-14
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV++NEV  +     G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGETQQKLDVIANEVLLDANEWGGHLAAMASEEMESFYEIPNRYPKGEYLLMFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 41.9726 bits (97), Expect = 2.383e-14
Identity = 19/62 (30.65%), Postives = 39/62 (62.90%), Query Frame = 2

Query:  248 TLTNWLLKQEQS-GVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +LT +L+++++    I  EL +++  ++ ACK I++ V +  ++ + G  G  NVQGE Q++
Sbjct:    5 SLTRYLVEEQRKHNTIQPELRLLIEVVARACKAISNAVSKGALAGVLGSAGTGNVQGETQQK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16A1_CUPTR (Fructose-1,6-bisphosphatase class 1 1 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=fbp1 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.383e-14
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV++NEV  +     G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGETQQKLDVIANEVLLDANEWGGHLAAMASEEMESFYEIPNRYPKGEYLLMFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 41.9726 bits (97), Expect = 2.383e-14
Identity = 19/62 (30.65%), Postives = 39/62 (62.90%), Query Frame = 2

Query:  248 TLTNWLLKQEQS-GVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +LT +L+++++    I  EL +++  ++ ACK I++ V +  ++ + G  G  NVQGE Q++
Sbjct:    5 SLTRYLVEEQRKHNTIQPELRLLIEVVARACKAISNAVSKGALAGVLGSAGTGNVQGETQQK 66

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_CHLCH	1.412e-14	44.44	Fructose-1,6-bisphosphatase class 1 OS=Chlorobium ...	[more]
F16PA_PSEPF	1.834e-14	42.03	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16PA_SODGM	1.835e-14	47.06	Fructose-1,6-bisphosphatase class 1 OS=Sodalis glo...	[more]
F16PA_PROA2	1.835e-14	44.44	Fructose-1,6-bisphosphatase class 1 OS=Prosthecoch...	[more]
F16PA_ACIBY	1.836e-14	44.12	Fructose-1,6-bisphosphatase class 1 OS=Acinetobact...	[more]
F16PA_ACIBT	1.836e-14	44.12	Fructose-1,6-bisphosphatase class 1 OS=Acinetobact...	[more]
F16PA_ACIBS	1.836e-14	44.12	Fructose-1,6-bisphosphatase class 1 OS=Acinetobact...	[more]
F16PA_ACIBC	1.836e-14	44.12	Fructose-1,6-bisphosphatase class 1 OS=Acinetobact...	[more]
F16A1_RALEH	2.383e-14	43.48	Fructose-1,6-bisphosphatase class 1 1 OS=Ralstonia...	[more]
F16A1_CUPTR	2.383e-14	43.48	Fructose-1,6-bisphosphatase class 1 1 OS=Cupriavid...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT