CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9978	contig	Csv1_Contig9978:27..719.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CHLL2 (Fructose-1,6-bisphosphatase class 1 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=fbp PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.384e-14
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +NE   N +   GR  ++ SEE D  +   ++ +GNY ++FDPLDGSSNID  VS G
Sbjct:   65 KKLDLFANEKIINAIGQHGRFAVMGSEENDGIIIPPKNETGNYALLFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 37.7354 bits (86), Expect = 2.384e-14
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ELT +L+ ++ A K +   V RAG+ ++ G  G  NVQGE+ K+
Sbjct:   23 ELTDLLTDVAFAAKLVRREVVRAGLVDILGFAGTTNVQGEEVKK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ACIAD (Fructose-1,6-bisphosphatase class 1 OS=Acinetobacter sp. (strain ADP1) GN=fbp PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.386e-14
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV+SN+   + L+     G +ASEE D     ++   G Y+V+FDPLDGSSNID  +  G
Sbjct:   57 QGETQKKLDVLSNDFLIDALKVHPHVGGLASEELDEFTPGQQD--GKYLVLFDPLDGSSNIDINMCVG 122

HSP 2 Score: 45.4394 bits (106), Expect = 2.386e-14
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL  +L  Q+++G +  EL  V+ +I+ +CK+I   +Q+  +++L G  G  NVQGE QK+
Sbjct:    5 TLAQYL--QQKNGNLTPELAQVIETIANSCKKIDHAIQKGALADLLGSAGNENVQGETQKK 63

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_RALEJ (Fructose-1,6-bisphosphatase class 1 OS=Ralstonia eutropha (strain JMP134) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.096e-14
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLDV++NEV  +     G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGETQQKLDVIANEVLLDANEWGGHLAAMASEEMESFYEIPNRYPKGEYLLMFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 41.5874 bits (96), Expect = 3.096e-14
Identity = 19/62 (30.65%), Postives = 39/62 (62.90%), Query Frame = 2

Query:  248 TLTNWLLKQEQS-GVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +LT +L+++++    I  EL +++  ++ ACK I++ V +  ++ + G  G  NVQGE Q++
Sbjct:    5 SLTRYLVEEQRKHNTIQPELRLLIEVVARACKAISNSVNKGALAGVLGSAGTGNVQGETQQK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BURPP (Fructose-1,6-bisphosphatase class 1 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=fbp PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.096e-14
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNE+        G    +ASEE +    +  +Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   63 QGEVQKKLDILSNEILLEANEWGGNLAGMASEEMEQFFPIPANYPKGEYLLVFDPLDGSSNIDVNVSIG 131

HSP 2 Score: 43.5134 bits (101), Expect = 3.096e-14
Identity = 21/62 (33.87%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TLT +L++Q+ ++  + A+L +++  ++ ACK I+  V +  + +  G  G+ NVQGE QK+
Sbjct:    8 TLTKYLIEQQRETNNLPADLRLLIEVVARACKAISYHVSKGALGDALGTAGSENVQGEVQKK 69

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16A1_BURXL (Fructose-1,6-bisphosphatase class 1 1 OS=Burkholderia xenovorans (strain LB400) GN=fbp1 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.096e-14
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNE+        G    +ASEE +    +  +Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   63 QGEVQKKLDILSNEILLEANEWGGNLAGMASEEMEQFFPIPANYPKGEYLLVFDPLDGSSNIDVNVSIG 131

HSP 2 Score: 43.5134 bits (101), Expect = 3.096e-14
Identity = 21/62 (33.87%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TLT +L++Q+ ++  + A+L +++  ++ ACK I+  V +  + +  G  G+ NVQGE QK+
Sbjct:    8 TLTKYLIEQQRETNNLPADLRLLIEVVARACKAISYHVSKGALGDALGTAGSENVQGEVQKK 69

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16A1_BURP8 (Fructose-1,6-bisphosphatase class 1 1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=fbp1 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.096e-14
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNE+        G    +ASEE +    +  +Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   63 QGEVQKKLDILSNEILLEANEWGGNLAGMASEEMEQFFPIPANYPKGEYLLVFDPLDGSSNIDVNVSIG 131

HSP 2 Score: 43.5134 bits (101), Expect = 3.096e-14
Identity = 21/62 (33.87%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TLT +L++Q+ ++  + A+L +++  ++ ACK I+  V +  + +  G  G+ NVQGE QK+
Sbjct:    8 TLTKYLIEQQRENNNLPADLRLLIEVVARACKAISYHVSKGALGDALGTAGSENVQGEVQKK 69

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_VIBF1 (Fructose-1,6-bisphosphatase class 1 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fbp PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.097e-14
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGN--YIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV +N+ F + L +  +   +ASEEED  VA  +  + N  Y+V+ DPLDGSSNID  VS G
Sbjct:   65 QQKLDVYANDKFKSALEARDQVCGVASEEEDEAVAFNKELNKNAKYVVLMDPLDGSSNIDVNVSVG 130

HSP 2 Score: 40.817 bits (94), Expect = 3.097e-14
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 2

Query:  239 EIETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            EI TL  +++ KQ        EL+ ++ SI  A K +   + +AG+ ++TG  G  N+QGE Q++
Sbjct:    3 EIRTLGEFIVAKQHDFPHASGELSSLIGSIKLAAKIVNREINKAGLVDITGASGEENIQGEQQQK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_PSEMY (Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas mendocina (strain ymp) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.097e-14
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+        G    +ASEE D    +   Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   59 QGEVQKKLDVISNEILLEANEWGGHLAGMASEEMDNAYQIPGKYPKGAYLLVFDPLDGSSNIDVNVSVG 127

HSP 2 Score: 41.2022 bits (95), Expect = 3.097e-14
Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 2

Query:  248 TLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q +S    A+L  ++  ++ ACK I+  V +  +  + G   + NVQGE QK+
Sbjct:    5 TLSRYLIEQTRSHNTPADLRFLIEVVARACKAISHQVSKGALGGVLGSLDSENVQGEVQKK 65

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BURVG (Fructose-1,6-bisphosphatase class 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.097e-14
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYS-GNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNE+  +     G    +ASEE +    +  +Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   63 QGEVQKKLDILSNEILLDANEWGGNLAAMASEEMETFFPIPANYPRGEYLLVFDPLDGSSNIDVNVSIG 131

HSP 2 Score: 41.5874 bits (96), Expect = 3.097e-14
Identity = 20/62 (32.26%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q+ ++  + A+L +++  ++ ACK I+  V +  + +  G  G+ NVQGE QK+
Sbjct:    8 TLSKFLIEQQRETNNLPADLRLLIEVVARACKAISYNVSKGALGDALGTAGSENVQGEVQKK 69

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BURM1 (Fructose-1,6-bisphosphatase class 1 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.097e-14
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYS-GNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD++SNE+  +     G    +ASEE +    +  +Y  G Y++VFDPLDGSSNID  VS G
Sbjct:   63 QGEVQKKLDILSNEILLDANEWGGNLAAMASEEMETFFPIPANYPRGEYLLVFDPLDGSSNIDVNVSIG 131

HSP 2 Score: 41.5874 bits (96), Expect = 3.097e-14
Identity = 20/62 (32.26%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  248 TLTNWLLKQE-QSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            TL+ +L++Q+ ++  + A+L +++  ++ ACK I+  V +  + +  G  G+ NVQGE QK+
Sbjct:    8 TLSKFLIEQQRETNNLPADLRLLIEVVARACKAISYNVSKGALGDALGTAGSENVQGEVQKK 69

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_CHLL2	2.384e-14	46.03	Fructose-1,6-bisphosphatase class 1 OS=Chlorobium ...	[more]
F16PA_ACIAD	2.386e-14	42.65	Fructose-1,6-bisphosphatase class 1 OS=Acinetobact...	[more]
F16PA_RALEJ	3.096e-14	43.48	Fructose-1,6-bisphosphatase class 1 OS=Ralstonia e...	[more]
F16PA_BURPP	3.096e-14	42.03	Fructose-1,6-bisphosphatase class 1 OS=Burkholderi...	[more]
F16A1_BURXL	3.096e-14	42.03	Fructose-1,6-bisphosphatase class 1 1 OS=Burkholde...	[more]
F16A1_BURP8	3.096e-14	42.03	Fructose-1,6-bisphosphatase class 1 1 OS=Burkholde...	[more]
F16PA_VIBF1	3.097e-14	46.97	Fructose-1,6-bisphosphatase class 1 OS=Vibrio fisc...	[more]
F16PA_PSEMY	3.097e-14	44.93	Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas...	[more]
F16PA_BURVG	3.097e-14	42.03	Fructose-1,6-bisphosphatase class 1 OS=Burkholderi...	[more]
F16PA_BURM1	3.097e-14	42.03	Fructose-1,6-bisphosphatase class 1 OS=Burkholderi...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT