CF417415

Overview
NameCF417415
Unique NameCF417415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.599e-29
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTD-PNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 523
            F+ N +++GTVDFIFG +A V+QN  I  RK + GQ N VTA G         GIV+   RI    +L+  + +  +YLGRPWK+++ TVI+ + I DLI P GW EW G     T  Y E  N G GA T+ R  W   +V  SA E + +T  +++  ++W+     P  LGL
Sbjct:  416 FYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 67/175 (38.29%), Postives = 97/175 (55.43%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQ-NTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 523
            F+ N +++GTVDFI G +A V+QN  I  RK + GQ N VTA G+        GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I DLI P GW+EW G     T  Y E  N G GA  + RV W   ++  SA E + FT  +++  ++W+        LGL
Sbjct:  399 FYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGW 313
            F+ +C I GTVDFIFG AAAV Q C I ARKP  GQ N++TAQ R +    +G   QK  I A+SDL P++G+  T+LGRPW+ +SR V M+S I D+I  AGW
Sbjct:  183 FYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            +F NC I G  DFI G+A+++ + C +H+  PN+G    +TAQ RT   + +G      ++          GS  T+LGRPW  YSR V   S  ++++ P GW++W  +   NT++YGE++  G GA    RV+W       S  EA  F    FI G  WL
Sbjct:  185 YFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGS---ITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWS---KQLSDEEATVFLSKDFIGGKDWL 332          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            ++ +C I G+VDFIFGNA ++ + C +HA     G    VTAQGR+   ++TG    K ++  T  L         YLGR W  +SR V   + + ++I P GW+ W       T+FYG+++ +GAGA   GRV W   R +T   EA+ F   +FI GS W+
Sbjct:  234 YYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGA---VTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 58/163 (35.58%), Postives = 75/163 (46.01%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            +F  C I G VDFIFGNA ++ Q+CDIH+     G    + A  R    ++TG       I  T  +         YLGR W  YSRTV     I D+I P GW +W        + +GE+   G GA   GRV W   + +T   E + F    FI G  WL
Sbjct:  231 YFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYGA---IAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 59/168 (35.12%), Postives = 89/168 (52.98%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDI--HARKPNSGQKNM---VTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            +F +C I G++DFIFGNA ++ Q+C I   A + + G K +   VTA GR+  ++N+G       IG T  +         +LGR W+ YSR V + +++TD+I P GW+ ++      T+FYGE+  SG GA  S R     +    + T+       SFI G  WL
Sbjct:  233 YFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAP---YVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 58/165 (35.15%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHAR--KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            +F  C I G VDFI G+  ++ Q+C I     +   G    +TAQGRT+ N   G V              V G    YLGR W+ YSR +   S++TD++ P GW EW+       L Y EH   G+G+ TS R KW       SA+  Q     SFI    W+
Sbjct:  171 YFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINCL---------VHGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKWV---KKLSASAVQHLADLSFINRGGWV 323          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 57/168 (33.93%), Postives = 82/168 (48.81%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 499
            FF  C I G++DFIFGN  ++ Q+C I+  A+   SG    +TAQGR   ++ +G      +I          GS    LGR W  Y+  V   + ++ +I P GW+ W  +    T+ +GEH+  G GA    RV    F    + +EA +F   SFI G  WL  T
Sbjct:  233 FFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVL---FGKQLTDSEASSFIDVSFIDGDEWLRHT 388          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.444e-19
Identity = 57/171 (33.33%), Postives = 78/171 (45.61%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHAR--KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFP 508
            +F  C I G VDFIFG   ++ Q+C I     +   G    +TAQGRT+P    G +              V G+   +LGRPW+ YSR +   S++TD++ P GW  W+     N L + EH   G+GA    RVKW       S +  Q     SFI    W+     P
Sbjct:  176 YFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINCL---------VYGTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKWV---KKLSESAIQNLADLSFINRGGWVEDLPIP 334          
The following BLAST results are available for this feature:
BLAST of CF417415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PME37_ARATH1.599e-2940.00Probable pectinesterase/pectinesterase inhibitor V... [more]
PME_BRACM8.773e-2838.29Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME56_ARATH9.699e-2753.85Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME11_ARATH7.685e-2435.58Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME53_ARATH6.506e-2337.42Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.039e-2035.58Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME8_ARATH5.155e-2035.12Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME55_ARATH1.500e-1935.15Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME15_ARATH4.364e-1933.93Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME29_ARATH7.444e-1933.33Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-345 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417415 ID=CF417415; Name=CF417415; organism=Citrus sinensis; type=EST; length=658bp
GTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTA
ATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAAT
TCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCA
AAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATT
TAAAACCGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAG
GAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCA
CCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGT
TTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGA
GTGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGC
TTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTG
GTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTTTAATTAAT
ATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAATTTGTAATA
TTTGATTGAGCGTGTCTTATTCGTGGCTTCGATCTCACAAATACTATTGT
GTGATTTA
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