CF417415

Overview
NameCF417415
Unique NameCF417415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:744..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 54/164 (32.93%), Postives = 83/164 (50.61%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHA-RKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF  C I G++DFIFGN  ++ ++C +H+  K N+     +TA G+      TG V    +I          GS   +LGR W+ Y+R +  ++ ++ ++   GW++        T++YGEH+  G GA  S RV    +  + S  EA  FT  SFI G  WL
Sbjct:  184 FFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENT--IGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 52/167 (31.14%), Postives = 81/167 (48.50%), Query Frame = 2
Query:    5 FVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK---NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 496
            F NC I G +DFIFG+  +V ++C I+A       K     +TAQGR+  +  +G V  +           V GS   YLGR +  +SR + +Q+ ++ ++HP GW+ W       +  Y E +  GAG+  S RV W     + S    Q F+  +FI    W+ +
Sbjct:  134 FKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGS---------VSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 57/175 (32.57%), Postives = 78/175 (44.57%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARK---PNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQA--FTPGSFIAGSSWLGSTGFPF 511
            ++  C+I+G +DFIFG A ++ + C +  R    P +     +TAQGR  P    G V +            V GS    LGR WK YSR +  +S  +D I P GW  W        + + E   +G GA TS RV W     +T A+E     FT  +FI    WL      F
Sbjct:  179 YYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDCT---------VMGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW-----LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 53/131 (40.46%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    5 FVNCLIAGTVDFIFG-NAAAVLQNCDIHARK-PNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLF--YGEHQNSGAGA 385
            ++N  I G VDFIFG +A A  QN DI   + P S     +TA GR+     +  VI KS + A       +G++  YLGRPW EY+R V  Q+S+T++I+  GW EW  +   NT +  +GE+ N+GAG+
Sbjct:  173 YINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPTSAS---ITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTS-TPNTEYVTFGEYANTGAGS 297          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 50/164 (30.49%), Postives = 74/164 (45.12%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWD-GNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            +F  C I G++DFIFGN  ++ ++C++H+     G    + A GRT P + TG      R         V G+ P Y+GR   +YSR V   +    L+   GW +WD  +    T F+G +   G GA  +  V W           A  F   SF+ G  W+
Sbjct:  209 YFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGS---IAAHGRTCPEEKTGFAFVGCR---------VTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWAR---ALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKW 409
            +  +C I G+VDFIFGN+ A+L++C IH +      +  +TAQ R    ++TG V  +  I           S   YLGRPW  + R V+  + +   I   GWH W       +  + E++  G G+ +S RV W
Sbjct:  154 YLKDCYIEGSVDFIFGNSTALLEHCHIHCKS-----QGFITAQSRKSSQESTGYVFLRCVITGNGQ------SGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW 278          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            ++  C I G++DFIFG A ++  NC+I        +    +TA  R    + TG V  + +         V G    YLGR    YSR +  ++ ++  + P GW  W  + +   L++GE++  G GA    R  W   + +T   E ++F    FI G+SWL
Sbjct:  185 YYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGK---------VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWA--KDLTK-QEVESFLSIDFIDGTSWL 336          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 50/163 (30.67%), Postives = 75/163 (46.01%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF +C I GT DFIFG  A++  N  +HA     G + ++TAQGR    +  G      ++  T            YLGR W  + + V   + +T +++P+GW E        T+FYGE++  G G+    RV    +       E   F    +I GS+WL
Sbjct:  207 FFKDCYIEGTYDFIFGRGASLYLNTQLHA--VGDGLR-VITAQGRQSATEQNGYTFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVP---YTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 53/163 (32.52%), Postives = 81/163 (49.69%), Query Frame = 2
Query:    5 FVNCLIAGTVDFIFG-NAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFA-LNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSW 487
            +    I G VDFIFG +A A    CDI   +  S     +TA GR+  + ++  VI KS + A        G++  YLGRPW +Y+R    ++S+TD+I+  GW EW  +      + + E+ N+G GA        +G R   S+   +  T  S++ GS W
Sbjct:  172 YAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSAS--ITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA--------EGPRANFSSELTEPITI-SWLLGSDW 321          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 51/176 (28.98%), Postives = 75/176 (42.61%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKN---MVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLG 520
            ++  C+I+G +DFIFG   ++ + C ++         N    +TA  R  P+   G V              V G   T LGR W   +R +  +S ++D++ P GW  W        L + E   +GAGA TS RV W       S +E   F   SFI    W+  + FP   G
Sbjct:  174 YYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCT---------VTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW---LKKLSLSEVDGFASVSFIDQDGWI--SRFPIEGG 335          
The following BLAST results are available for this feature:
BLAST of CF417415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PME14_ARATH3.694e-1832.93Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME52_ARATH6.301e-1831.14Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME10_ARATH8.230e-1832.57Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME_ASPAC6.967e-1740.46Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME68_ARATH1.314e-1530.49Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME31_ARATH8.517e-1532.35Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME67_ARATH1.453e-1429.27Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME50_ARATH2.478e-1430.67Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME_ASPTU4.227e-1432.52Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME66_ARATH1.041e-1228.98Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-345 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417415 ID=CF417415; Name=CF417415; organism=Citrus sinensis; type=EST; length=658bp
GTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTA
ATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAAT
TCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCA
AAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATT
TAAAACCGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAG
GAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCA
CCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGT
TTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGA
GTGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGC
TTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTG
GTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTTTAATTAAT
ATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAATTTGTAATA
TTTGATTGAGCGTGTCTTATTCGTGGCTTCGATCTCACAAATACTATTGT
GTGATTTA
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