CF417415

Overview
NameCF417415
Unique NameCF417415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 46/163 (28.22%), Postives = 70/163 (42.94%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF NC I GT DFIFG  A++     +HA     G + ++ A  R    +  G      ++               YLGR W  + + V   + ++ +++P+GW E        T+FYGE+  +G G+  + RV            EA  F    +I GS WL
Sbjct:  207 FFKNCYIEGTYDFIFGRGASLYLTTQLHA--VGDGLR-VIAAHNRQSTTEQNGYSFVHCKVTGVGT--------GIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRV---AHTQDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 44/163 (26.99%), Postives = 69/163 (42.33%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G+  + RV    F       EA  F    +I GS WL
Sbjct:  207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 44/163 (26.99%), Postives = 69/163 (42.33%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G+  + RV    F       EA  F    +I GS WL
Sbjct:  207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CF417415 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 44/163 (26.99%), Postives = 73/163 (44.79%), Query Frame = 2
Query:    2 FFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 490
            FF +C I GT DFIFG+  ++     ++          ++TA       + +G      ++  T            YLGR W  + + V   + ++ +++P+GW E        T+FYGE++ +G G+    RVK   +       EA+ F    +I GSSWL
Sbjct:  184 FFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGI---RVITAHAGKSAAEKSGYSFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVK---YTQDIDDIEAKYFISLGYIQGSSWL 332          
The following BLAST results are available for this feature:
BLAST of CF417415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PME49_ARATH1.503e-1128.22Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME48_ARATH1.963e-1126.99Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH2.564e-1126.99Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME63_ARATH7.461e-1126.99Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-345 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417415 ID=CF417415; Name=CF417415; organism=Citrus sinensis; type=EST; length=658bp
GTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTA
ATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAAT
TCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCA
AAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATT
TAAAACCGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAG
GAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCA
CCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGT
TTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGA
GTGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGC
TTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTG
GTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTTTAATTAAT
ATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAATTTGTAATA
TTTGATTGAGCGTGTCTTATTCGTGGCTTCGATCTCACAAATACTATTGT
GTGATTTA
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