CF417422

Overview
NameCF417422
Unique NameCF417422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 52/139 (37.41%), Postives = 88/139 (63.31%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDH 462
            ++D  V +++++M  FI+QEAEEKA EI + A+EEF IEK +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+
Sbjct:    7 LSDDQVGQELRKMTAFIKQEAEEKAREIQIKADEEFAIEKSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADY 145          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 47/138 (34.06%), Postives = 84/138 (60.87%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            ++D  V  ++ +M  FI +EA+EKA EI + A+EE+ IEK  +V +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D
Sbjct:    3 LSDEQVKSELSKMQAFIEKEAKEKAKEIKLKADEEYEIEKASIVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQD 140          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 47/150 (31.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:   10 INNLIKSKDPAKMNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            +++ I +  P ++ND     ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D
Sbjct:    1 MSSAITALTPNQVND-----ELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERD 145          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 46/138 (33.33%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            ++D  V  ++ +MV FI+QEA EKA EI   +EEEF +EK ++V  +   I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D
Sbjct:    3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRD 140          
The following BLAST results are available for this feature:
BLAST of CF417422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_NEUCR2.682e-2237.41V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_CANAL5.593e-2034.06V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_YEAST1.166e-1731.33V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_SCHPO1.989e-1733.33V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-352 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417422 ID=CF417422; Name=CF417422; organism=Citrus sinensis; type=EST; length=684bp
CATTTTGATATCAACAATCTAATCAAATCAAAAGATCCCGCGAAAATGAA
CGACGCTGATGTTTCGAAGCAGATCCAGCAGATGGTGCGGTTTATCCGCC
AAGAAGCCGAAGAGAAAGCCAACGAGATCTCAGTTTCTGCCGAAGAAGAA
TTCAACATAGAGAAGTTGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCAG
ACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGAAATCAGAAAGAAGATTG
AGTACTCCATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAG
GATGATTTGGTCAGTAATATGATGGAGGCAGCATCAAAGGAGGTTTTGAA
TGTGAGTCGAGATCACAATTCATATAAGAAGCTTTTGAAGGGTCTTATTG
TTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGATGCCGC
AAAGATGACCATCATTTGGGTGGAGTCTGTTTTGGAGTCAGCAAAAGAGG
AATATGCACAGAAAATTGCAGGTTCACCCACCAGAGNATNAATTGTGGAT
CATCAAATCTATCTTCCGCCTGGCCCTGGCCATCATAATGCCCATGGTCC
ATCCTGCTCAGGGAGGGNGTCGTGGTGGCTTCTCGAGATGGGNAAGATAG
TATGTGAGAATACCCTTGGATGCCCGGGTGGGAT
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