CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.324e-34
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE  I C DDT+ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   13 GENSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.324e-34
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE  I C DDT+ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   13 GESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.324e-34
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE  I  PDD FILDA EEAGLDLPYSCRAGACSSCTGK++ G VDQSEQSFLDDDQM EGFVLTC AYP  D+TIETH EE+L
Sbjct:   12 GERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.964e-34
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQ+ EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   63 GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 3
Query:   60 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            I+  DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 3
Query:   60 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            I+  DDT+ILDAAEE G+DLPYSCRAGACS+C GKVVSGTVDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_SYNY42.324e-3477.38Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY32.324e-3477.38Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_GLEJA2.324e-3479.76Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_MESCR3.964e-3476.19Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_DATST5.177e-3475.58Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU5.177e-3475.58Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_DATME8.831e-3475.58Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN8.831e-3475.58Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER1_SYNP68.831e-3482.50Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE78.831e-3482.50Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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