CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.413e-23
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 3
Query:   51 EEEINC----PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            EE IN      DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   12 EEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.148e-23
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 3
Query:   60 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 302
            I   ++T ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.665e-22
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   72 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            +DT +L+AAEEA LDLP+SC +GACSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:   23 EDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.481e-22
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 3
Query:   69 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            P +  I  A+E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIASEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.937e-22
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 3
Query:   51 EEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            +  I   +DT IL+ A E G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+QM +GF L C  YP S+ TI+TH+E  L
Sbjct:   16 DSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.013e-21
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 3
Query:   69 PDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            P +  I   +E+A  DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct:   19 PGERLIDIGSEKA--DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.727e-21
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   72 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            ++T ILDAAE+  ++LP+SC++G+CSSC  KVV G VDQSEQ FLD++QM +GF++ C +YP SD TI TH+E  L
Sbjct:   23 ENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.727e-21
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E+EI   +D  IL++AE AGL+LPYSCR+G C +C GK+VSG VDQS  SFL+++Q+ +G++LTC A P  D  + THK+ +L
Sbjct:   63 GEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.673e-16
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 3
Query:   36 LHTGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            ++ G  +      D  +LD+A+ AG+DLP SC  G C++C  +++SG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:    9 IYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: PAAE_ECOLI (Probable phenylacetic acid degradation NADH oxidoreductase paaE OS=Escherichia coli (strain K12) GN=paaE PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   72 DDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP-TSDVTIE 278
            DD  ILDAA   G DLPY+C+ G C++C  KV+ G V       L+ D++  G+VL+C A P TSDV ++
Sbjct:  280 DDESILDAALRQGADLPYACKGGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVD 349          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_APHSA1.413e-2361.36Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FERH_ANAVT3.148e-2359.26Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO2.665e-2259.21Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_EQUTE3.481e-2266.23Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FERH_FREDI5.937e-2255.42Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FER2_EQUAR1.013e-2164.94Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERV_ANAVT1.727e-2157.89Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER4_ARATH1.727e-2152.94Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_SYNP61.673e-1640.91Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
PAAE_ECOLI2.764e-1145.71Probable phenylacetic acid degradation NADH oxidor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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