CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.506e-33
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQM EG+VLTCAAYP SDV IETHKEEEL
Sbjct:   12 GEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.967e-33
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E NCPDD +ILD AEE G DLPYSCRAGACSSC GK+V G+VDQS+ SFLDDDQ+G GFVLTC AYP S+VTIETHKEE L G
Sbjct:   12 GPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:   12 GPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.356e-33
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G  + I   DDT+ILDAAEEAGLDLPYSCRAGACS+C GK+ SGTVDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEEEL
Sbjct:   14 GLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.383e-33
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.383e-33
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+QS+LDD Q+ +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   64 GEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.724e-33
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 3
Query:   42 TGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            +G   E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV +G VDQS+ SFLDDDQ+GEG+VLTC AYPTSDV IETHKEEEL
Sbjct:   11 SGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.724e-33
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + I C DD +ILDAAEE G+DLPYSCRAGACSSC GKV SG+VDQS+QSFL+D QM EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   12 GSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 7.476e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G  E I+C DDT+ILDAAEEAGLDLPYSCRAGACS+C GK+ SG++DQS+QSFLDDDQ+  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   14 GINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_HORVU1.506e-3377.38Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_SOLLS1.967e-3375.58Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_SOLLY2.569e-3373.26Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_DATAR2.569e-3374.42Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_CHLFR3.356e-3377.65Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_ATRBE4.383e-3374.42Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_MAIZE4.383e-3374.42Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FERB_ALOMA5.724e-3374.42Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER2_SPIOL5.724e-3377.38Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_SPIMA7.476e-3374.12Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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