CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:238..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.275e-32
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + EINCP+D +ILDAAEE G+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDD+Q+ EGFVLTC AYPTS+ TI TH+EE L
Sbjct:   14 GIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G VDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   12 GAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G  E I+C DDT+ILDAAEEAGLDLPYSCRAGACS+C G + SGT+DQS+QSFLDDDQ+  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   14 GINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDV IETHKEEEL G
Sbjct:   12 GPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   14 GTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G ++ I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV +G+VDQS+QSFLDD Q+G+GFVLTC AYPTSD TI TH+EE L
Sbjct:   12 GVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+Q+GEG+VLTC AYP SD TIETHKEEEL
Sbjct:   12 GQQEFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   14 GTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   14 GTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G    I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQ+  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   14 GTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_CYACA1.275e-3274.12Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_TOBAC1.665e-3275.00Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_SPIPL1.665e-3274.12Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_SCOJA2.175e-3273.26Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_NOSMU2.175e-3274.12Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER_GUITH2.175e-3272.94Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_COLES2.175e-3273.81Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_ANASP2.175e-3274.12Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO2.175e-3274.12Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER1_ANAVT2.841e-3274.12Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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