CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+Q+  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   64 GTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   55 GEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   55 GEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G+  I+  DD +ILDAAEEAGL LPYSCRAGACSSC GKV +G VDQS++SFLDDDQM EG+VLTC AYPTSD+TI+TH+EE L
Sbjct:   11 GQSVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G +E I CPDD +ILDAAEE GLDLPYSCRAGACS+C GK++ G VDQS+QSFLDDDQ+  GFVLTC AYPTS+ TI TH+EE L
Sbjct:   13 GIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 302
            G + I CP DT++LDAAE+ GLDLPYSCRAGACSSC GKV +G+V+Q + SFLD++QM  G+VLTC AYPTSDVTIETHKEE+L+
Sbjct:   13 GTKTITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-31
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G +  I CPDD +ILDAAEE G+DLPYSCRAGACS+C GKVV GTVDQS+QSFLDD Q+  G+VLTC AYP+SD T++TH+EE L
Sbjct:   14 GLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++ I    D +ILDAAEEAGLDLPYSCRAGACSSC GKV +GT+DQS+QSFLDDDQ G GFVLTC AY TSD TI TH+EE L
Sbjct:   11 GDQTIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.102e-31
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE+++    D++ILDAAEEAG+DLPYSCRAG+CSSC GKV SGTVDQS+QSFLDDDQM  GFVLTC AY TSD TI TH+EE L
Sbjct:   11 GEQKVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 305
            G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:   59 GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_PEA1.410e-3172.62Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_ORYSJ1.410e-3172.62Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI1.410e-3172.62Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_MARPO1.841e-3173.81Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER3_CYACA1.841e-3172.94Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER2_PHYES2.405e-3170.59Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_CYAPA2.405e-3170.59Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER2_DUNSA3.141e-3173.81Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_DUNSA4.102e-3173.81Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_CAPAN5.357e-3169.77Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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