CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G   I CP DT++LDAAEE+GLDLPYSCRAGACSSC GKV +G V+Q + SFL+++QM  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   13 GTNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE+E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG VD S+ SFL+DD M  G+VLTC AY  SDV IETHKEEE+
Sbjct:   13 GEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE   + PDD +ILD+A +AG DLP SCRAGACS+C GK+VSGTVDQSEQSFLDDDQ+  G+VLTC AYP SDVTIET+KEEEL
Sbjct:   13 GEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.559e-30
Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G +  INCP D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+VDQS+QSFLD++Q+  GF+LTC AYPTSD  I+TH+EE L
Sbjct:   12 GVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.036e-30
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 3
Query:   60 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            I  PDD +ILDAAEE G+DLPYSCRAGACS+C GK+ +GTVDQS+QSFLDDDQ+  G+VLTC AYPTSD TI TH+EE+L
Sbjct:   19 IEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.659e-30
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:   59 GPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.659e-30
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE  ++ P+ T ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VDQSE SFLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct:   11 GEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.535e-30
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++   CP D++ILD AEE GL+LPYSCRAG+CSSC GKV++G++DQS+Q+FLDDDQ G+G+ LTC  YPTSDVTI+TH E EL
Sbjct:   10 GKKSFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.535e-30
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G +E  CPDD +ILD AEE G+ LPYSCRAG+CSSC GKV +G V+QS+ SFLDDDQ+ EG+VLTC AY  SDVTIETHKEEEL
Sbjct:   12 GTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.923e-30
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE  ++ P+ T ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE SFLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct:   11 GEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_PHYAM5.357e-3171.43Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_PANGI1.193e-3071.43Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER1_SYNP21.193e-3073.81Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER2_CYACA1.559e-3068.24Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_PLEBO2.036e-3073.75Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER1_SOLLC2.659e-3071.43Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_EQUTE2.659e-3076.19Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_PERBI4.535e-3066.67Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_MEDSA4.535e-3071.43Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER1_EQUAR5.923e-3075.00Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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