CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.489e-28
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG     +QSFLDDDQ+  G++LTC AYPT D  IETHKEE L
Sbjct:   13 GDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.489e-28
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 302
            G +E I  PDD +ILDAAEEAGLDLP+SCR+G+CSSC G +  GTVDQS+Q+FLDDDQ+  G VLTC AYPTS+  IETH+E+ +A
Sbjct:   14 GLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   13 GSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   13 GSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct:   13 GSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E E + PDD +ILDAAE AG++LPYSCRAGACS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   67 GEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.245e-28
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E+E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:   70 GQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.457e-28
Identity = 55/86 (63.95%), Postives = 65/86 (75.58%), Query Frame = 3
Query:   42 TGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            TG E    C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G VDQS+QSFLDD Q+ +GFVLTC AYP SD  I TH+EE +
Sbjct:   60 TGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G E E   PDDT+IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD QM EG++LTC +YP +D  I THKEE+L
Sbjct:   70 GTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.082e-23
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 3
Query:   60 INCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 302
            I   ++T ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_APHSA2.489e-2866.67Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_NOSMU2.489e-2866.28Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_THEVL3.250e-2867.06Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB3.250e-2867.06Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN3.250e-2867.06Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER3_MAIZE3.250e-2865.88Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH4.245e-2865.88Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER_PHYPA9.457e-2863.95Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER6_MAIZE2.107e-2762.35Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FERH_ANASP1.082e-2360.49Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
back to top