CF417436

Overview
NameCF417436
Unique NameCF417436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7159 contig Csv1_Contig7159:36..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   84 SQTGGTRHPVYXGXXXXR-WGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA 365
            S+  G RHP+Y G    +   KWVSEI  PR   RIWLG+F  PEMAA AYD AA  LKG +A+LNFP+ V +LP P++ +  DIQ AAA AA A
Sbjct:    5 SKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAA 99          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA 365
            TRHP+Y G      GKWVSE+  P  KTRIWLG+F   EMAARA+D AA  L+GR A LNF D    L  P +  A+DIQ+AAA+AA A
Sbjct:   43 TRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALA 131          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSESDGDD 416
            TRHP+Y G      GKWV E+  P  KTRIWLG+F   EMAARA+D AA  L+GR A LNF D    L  P +  A+DIQ+AAA+AA A     E  D +   G D
Sbjct:   46 TRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALA--FQDEMCDATTDHGFD 149          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 50/98 (51.02%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   72 RKSXSQTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA 365
            RKS           Y G     WGKWVSEI  PR K+RIWLG++P  EMAARA+D AA  +KG    LNFP+    LPRP + + +DIQ AA KAA A
Sbjct:   57 RKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEA 154          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA 365
            TRHP+Y G      GKWV E+  P  K+RIWLG+FP  EMAARA+D AA  L+GR A LNF D    L  P T   ++IQ+AA++AA A
Sbjct:   49 TRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMA 137          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            TRHP+Y G      GKWV E+  P  KTRIWLG+F   EMAARA+D AA  L+GR A LNF D    L  P +  A++IQ+AAA+AA
Sbjct:   46 TRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAA 132          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  102 RHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            + PVY G    R GKWVSEI  PR  TRIWLG++P  EMAA AYD AA  LKGR+A LNFP  V + P P + +A DI+ AAA AA
Sbjct:   15 KDPVYRGIRC-RSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAA 99          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            Y G    +WGKWVSEI  P  KTRIWLGS+   EMAA AYD AA  L+GR   LNFP+ V++ PRP + ++  IQ AA  AA
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQAAAQDAA 101          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWG-KWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKG-RKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            TRHPVY G      G +WV E+  P+ + RIWLG++P PEMAARA+D AA  L+G R A+LNFPD    LPR  T +  DI+ AAA+AA
Sbjct:   42 TRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAA 130          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWG-KWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKG-RKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            TRHPVY G      G +WV E+  P+ + RIWLG++P PEMAARA+D AA  L+G R A+LNFPD    LPR  T +  DI+ AAA+AA
Sbjct:   42 TRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAA 130          
The following BLAST results are available for this feature:
BLAST of CF417436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ERF24_ARATH9.742e-2154.74Ethylene-responsive transcription factor ERF024 OS... [more]
DRE1B_ARATH2.170e-2056.18Dehydration-responsive element-binding protein 1B ... [more]
DRE1A_ARATH2.834e-2050.00Dehydration-responsive element-binding protein 1A ... [more]
ERF35_ARATH3.702e-2051.02Ethylene-responsive transcription factor ERF035 OS... [more]
DRE1D_ARATH2.399e-1952.81Dehydration-responsive element-binding protein 1D ... [more]
DRE1C_ARATH4.093e-1954.02Dehydration-responsive element-binding protein 1C ... [more]
ERF27_ARATH5.345e-1958.14Ethylene-responsive transcription factor ERF027 OS... [more]
ERF22_ARATH1.191e-1854.88Ethylene-responsive transcription factor ERF022 OS... [more]
DRE1F_ORYSJ1.555e-1853.93Dehydration-responsive element-binding protein 1F ... [more]
DRE1F_ORYSI1.555e-1853.93Dehydration-responsive element-binding protein 1F ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-366 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417436 ID=CF417436; Name=CF417436; organism=Citrus sinensis; type=EST; length=636bp
AACAACCATACTACATACGACTGTAACATGAATTGACTGACAGTGCCACC
GCTACAGCCNCCGCAATTCACCGTAAATCCANCTCACAAACAGGCGGCAC
GCGACACCCTGTCTATCNCGGTGNCCNGAANANACGGTGGGGCAAATGGG
TGTCTGAAATTACANAGCCACGCNAAAAGACACGCATTTGGCTGGGTTCG
TTCCCCNNGCCGGAAATGGCAGCTAGGGCTTATGACNTTGCTGCGTATTG
CTTAAAGGGACGAAAAGCTCAGCTAAATTTTCCTGACAAGGTTGAGGCCT
TGCCACGACCTTCCACGCGTGCGGCTAGAGATATTCAGGAGGCNGCGGCT
AAGGCAGCACATGCCGGACTCATTTCATCAGAAAAGAGTGATGTCTCGGA
ATCGGACGGTGATGACTTTTGGGGGGAGATTGAGTTGCCTGAGTTGATGA
ATTGGTGGGTGGTACAGTAATTCTTGCGGATGGACGTTCAGCTGTGATAC
CACGTCCNCGTGGATTGATGAAGATGCACANCCACAGGANCAGCANCCGC
CGNNCATGGCATGTNTGNAGATTGAACGCTGAGGTNTGATACGCGTGTAC
GTTTGTATACATATTTTTAACCGGGCGGTCCATCTT
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