CF417436

Overview
NameCF417436
Unique NameCF417436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7159 contig Csv1_Contig7159:36..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 3
Query:   36 TDSATATAXAIHRKSXSQTGGTRHP--VYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALP---RPSTRAARDIQEAAAKAAHAGLISSEKSDVSE 401
            T+       A+ ++  ++ G  R    VY G     WGKW +EI  PR   R+WLG+F   E AA AYD AA  ++G KA+LNFPD     P    P   + R   +  AK     ++S  +S++S+
Sbjct:   51 TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAK--KVCVVSQSESELSQ 175          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  111 VYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPD 287
            +Y G     WGKWV+EI  PR +TR+WLG+F   E AA AYD AAY L+G  A+LNFP+
Sbjct:  151 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 209          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKV 293
            Y G    +WGKWV+EI  P  ++RIWLGS+     AARAYD A + L+G  A+LNFP++V
Sbjct:   36 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDK----VEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSE----SDGDDFWGEI----ELPELMN 452
            Y G     WGKW +EI  PR  +R WLG+F   E AARAYD AA  ++G KA++NFP++    V +  RPS +   ++Q++ AK   +  +  + + +S+    +  D+ +G++    E P++ N
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAK-TNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYN 251          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPD 287
            TR P Y G    +WGKWV+EI  P  ++R+WLGS+     AARAYD A + L+G  A+LNFPD
Sbjct:   27 TRKP-YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  111 VYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKV 293
            +Y G    +WGKWV+EI  P+ +TR+WLG+F   + AA AYD AA+ ++G  A+LNFPD V
Sbjct:  110 LYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIV 170          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  111 VYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPD 287
            +Y G     WGKWV+EI  PR +TR+WLG+F   E AA AYD  A+ L+G  A+LNFP+
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPE 244          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 3
Query:   93 GGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVE 296
            G  R   Y G     WGKW +EI  P+   R+WLG+F   E AA AYD AA   KG KA+LNFP++V+
Sbjct:   83 GDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQ 150          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTR 320
            + G     WG WVSEI  P  KTRIWLG+F   E AARAYD AA  + G +A+ NFP    A+P  S++
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSK 76          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPST--RAARDIQEA 344
            Y G     WGKW +EI  P+   R+WLG+F   E AA AYD AA   KG KA+LNFP++V+     +T   A R + E+
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSES 117          
The following BLAST results are available for this feature:
BLAST of CF417436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RAP23_ARATH1.275e-1234.65Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP24_ARATH1.666e-1255.93Ethylene-responsive transcription factor RAP2-4 OS... [more]
RAP29_ARATH3.710e-1251.67Ethylene-responsive transcription factor RAP2-9 OS... [more]
RAP22_ARATH3.710e-1234.40Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP21_ARATH3.710e-1252.38Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF57_ARATH3.710e-1250.82Ethylene-responsive transcription factor ERF057 OS... [more]
ERF53_ARATH3.710e-1252.54Ethylene-responsive transcription factor ERF053 OS... [more]
EF114_ARATH3.710e-1248.53Ethylene-responsive transcription factor ERF114 OS... [more]
ERF03_ARATH6.329e-1249.28Ethylene-responsive transcription factor ERF003 OS... [more]
EF113_ARATH6.329e-1244.30Ethylene-responsive transcription factor ERF113 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-366 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417436 ID=CF417436; Name=CF417436; organism=Citrus sinensis; type=EST; length=636bp
AACAACCATACTACATACGACTGTAACATGAATTGACTGACAGTGCCACC
GCTACAGCCNCCGCAATTCACCGTAAATCCANCTCACAAACAGGCGGCAC
GCGACACCCTGTCTATCNCGGTGNCCNGAANANACGGTGGGGCAAATGGG
TGTCTGAAATTACANAGCCACGCNAAAAGACACGCATTTGGCTGGGTTCG
TTCCCCNNGCCGGAAATGGCAGCTAGGGCTTATGACNTTGCTGCGTATTG
CTTAAAGGGACGAAAAGCTCAGCTAAATTTTCCTGACAAGGTTGAGGCCT
TGCCACGACCTTCCACGCGTGCGGCTAGAGATATTCAGGAGGCNGCGGCT
AAGGCAGCACATGCCGGACTCATTTCATCAGAAAAGAGTGATGTCTCGGA
ATCGGACGGTGATGACTTTTGGGGGGAGATTGAGTTGCCTGAGTTGATGA
ATTGGTGGGTGGTACAGTAATTCTTGCGGATGGACGTTCAGCTGTGATAC
CACGTCCNCGTGGATTGATGAAGATGCACANCCACAGGANCAGCANCCGC
CGNNCATGGCATGTNTGNAGATTGAACGCTGAGGTNTGATACGCGTGTAC
GTTTGTATACATATTTTTAACCGGGCGGTCCATCTT
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