CF417436

Overview
NameCF417436
Unique NameCF417436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1B_ORYSI (Dehydration-responsive element-binding protein 1B OS=Oryza sativa subsp. indica GN=DREB1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRW-----GKWVSEITXPRXK-TRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPR-PSTRA---ARDIQEAAAKAAHA----GLISSEKSDVSESDGDD 416
            TRHPVY G           G+WV E+  P  + +R+WLG+F   E AARA+D AA  L+GR A LNF D    +P  P++ A   AR +++A A A  A        S  ++    DGD+
Sbjct:   28 TRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEAFQRQSAAPSSPAETFADDGDE 147          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DRE1I_ORYSJ (Dehydration-responsive element-binding protein 1I OS=Oryza sativa subsp. japonica GN=DREB1I PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 3
Query:   99 TRHPVYXGXXXX-RWGKWVSEITXP-RXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQ-LNFPDK--VEALPRPST-RAARDIQEAAAKA 356
            TRHPV+ G     R G+WV E+  P R   R+WLG+F   + AARA+D A   L+GR A  LNF D   + A+P P+T R A D+Q A A+A
Sbjct:   50 TRHPVFRGVRRRGRAGRWVCEVRVPGRRGCRLWLGTFDAADAAARAHDAAMLALRGRAAACLNFADSAWLLAVPPPATLRCAADVQRAVARA 141          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKS 389
            Y G     WG+W +EI  P    R+WLG+F   E AARAYD  A  ++G KA+LNFP++     +   +  + ++E         ++SS  S
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPS 116          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 3
Query:  114 YXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKA 356
            + G     WGKW +EI  PR   R+WLG+F   E AARAYD  A  ++G+KA++NFP+       P+T   R      AKA
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPE------APTTAQKRRAGSTTAKA 194          
The following BLAST results are available for this feature:
BLAST of CF417436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DRE1B_ORYSI2.405e-1138.33Dehydration-responsive element-binding protein 1B ... [more]
DRE1I_ORYSJ3.141e-1146.74Dehydration-responsive element-binding protein 1I ... [more]
ERF73_ARATH6.997e-1134.78Ethylene-responsive transcription factor ERF073 OS... [more]
ERF1_ORYSJ6.997e-1141.98Ethylene-responsive transcription factor 1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-366 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417436 ID=CF417436; Name=CF417436; organism=Citrus sinensis; type=EST; length=636bp
AACAACCATACTACATACGACTGTAACATGAATTGACTGACAGTGCCACC
GCTACAGCCNCCGCAATTCACCGTAAATCCANCTCACAAACAGGCGGCAC
GCGACACCCTGTCTATCNCGGTGNCCNGAANANACGGTGGGGCAAATGGG
TGTCTGAAATTACANAGCCACGCNAAAAGACACGCATTTGGCTGGGTTCG
TTCCCCNNGCCGGAAATGGCAGCTAGGGCTTATGACNTTGCTGCGTATTG
CTTAAAGGGACGAAAAGCTCAGCTAAATTTTCCTGACAAGGTTGAGGCCT
TGCCACGACCTTCCACGCGTGCGGCTAGAGATATTCAGGAGGCNGCGGCT
AAGGCAGCACATGCCGGACTCATTTCATCAGAAAAGAGTGATGTCTCGGA
ATCGGACGGTGATGACTTTTGGGGGGAGATTGAGTTGCCTGAGTTGATGA
ATTGGTGGGTGGTACAGTAATTCTTGCGGATGGACGTTCAGCTGTGATAC
CACGTCCNCGTGGATTGATGAAGATGCACANCCACAGGANCAGCANCCGC
CGNNCATGGCATGTNTGNAGATTGAACGCTGAGGTNTGATACGCGTGTAC
GTTTGTATACATATTTTTAACCGGGCGGTCCATCTT
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