CF417441

Overview
NameCF417441
Unique NameCF417441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 68/227 (29.96%), Postives = 108/227 (47.58%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            +++F+ TSTF+EYTV+    VAKI+  APL+KVC++ CG STG G+ +N  K +                               VD +S +F  AK+ G T+ +N  +++ PI EV+A+MT+ GVD + E  GN   M SA    H G G  +     P     S     +   +  +  +  G  ++  + P  +       +  +  ITH +PF +IN+ FE +
Sbjct:  138 IHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPGSTCAVFGLGGVGLSVIIGCKVAGASRIIGVDLNSDKFTTAKECGATECINPKDYNIPIHEVLAKMTDDGVDYAFEVIGNTTVMTSALSSSHFGCGKTVIVGLAPSSAVMSFDPLLILTGRILTGAVFGGWKSKDDV-PKLVRDYLNKKFDFDPLITHYMPFEKINEGFELL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 70/231 (30.30%), Postives = 99/231 (42.86%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN------GGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G STFS YTV+    VAK+ P AP DK+C + CGV+TG+GA +N AK E                               VD ++ + E  ++FG+T FVN SE D  +   +  MT       GG D + +CTGN+  M  A E  H G G  +     P   +         +T    K  + G        P  +         ++  ITH +   EINK F+ M
Sbjct:  135 HYMGCSTFSNYTVLPEIAVAKVRPDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVIQGLKLAGADMIIGVDLNNAKKEWGERFGMTHFVNPSEIDGDVVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQ-TRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLM 364          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 68/231 (29.44%), Postives = 99/231 (42.86%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN------GGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G STFS YTV+    VAK+   AP DK+C + CGV+TG+GA +N AK E                               VD +  +   A+ FG+T F+N    +  +QE++  +T       GG D S +CTGN+  M  A EC H G G  +     P   + S       +T    K  + G        P  +         ++  ITH +   +INK F+ M
Sbjct:  135 HYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIGVDLNDDKKPMAEHFGMTHFINPKNCENVVQEIV-NLTKTPFDQIGGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVAPAGAEIS-TRPFQLVTGRVWKGTAFGGARGRTDVPQIVDWYMDGKIEIDPMITHTLSLDDINKGFDLM 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 74/228 (32.46%), Postives = 102/228 (44.74%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSE-HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF+  S+F+EYTVV    + KI+P  P+D   +LSC V+TGLGA   VA  E                               VD +  +FE  K+FG+TDFVN +   ++ I EVI EMT+ G D S EC G    M  AF+    G G  +        +  S  S  +   +     L  G   + L  P+ +         LE  ITH + F EINKAF  +
Sbjct:  146 IHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPK-LDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLL 372          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 64/236 (27.12%), Postives = 104/236 (44.07%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            V HF+ TSTF+EYTV+    VAK++  AP +K C++ CG STG GA +  AK                                 +D +  +F++A   G T+ ++  +  +PI EV+++MT   V  + E  G ++ M+ A    H   G           +    P  +  LT +P   L +G T +G +          P  +       + L++ ITH +PF+ IN+ FE +
Sbjct:  137 VQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKVTPGSTCVVFGLGGVGLSVIMGCKAAGASRIIGIDINKDKFQKALAVGATECISPKDSTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYG---------TSVVVGAPPSAKMLTYDPML-LFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELL 362          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 64/236 (27.12%), Postives = 102/236 (43.22%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            V HF+ TSTF+EYTV+    VAKI+  AP +K C++ CG STG GA +  AK                                 +D +  +F++A   G T+ +N  +  +PI EV+++MT   V  + E  G ++ M+ A    H   G           +    P  +  L+ +P   L +G T +G +          P  +       + L + ITH +PF  I++ FE +
Sbjct:  137 VQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYG---------TSVVVGAPPSAKMLSYDPML-LFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELL 362          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV 458
            V+ ++   +FSEYTV+    VAKI+  APL+KVCI+ CG +TG GA +N AK                                 VD +  RF +AK  G TD V+  + ++PI+EV+++M +GGVD   E TGN + + +A    H   GV
Sbjct:  138 VHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGAAINSAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDRFAKAKTVGATDCVDPRDFEKPIEEVLSDMIDGGVDFCFEVTGNTEAVGAALGSCHKDHGV 289          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 65/225 (28.89%), Postives = 106/225 (47.11%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G S+FS+YTVV    +  I+  APL  +C+L CGV+TG GA  + AK E                               +D ++ +   AKKFG TDF+++S+    +Q VI ++T+GGVD + +CTGN+  M    +  H G G  LC +      +       + +T       + G        P  +      ++ ++++IT+  P   INKAF++M
Sbjct:  141 HYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKVKDLVQYVI-DVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGK-LCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHM 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 66/227 (29.07%), Postives = 97/227 (42.73%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVN--TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            H++G S+FS+YTVV    V K+   AP DK C+L CGV+TG GA +N AK  +                              +D +  +   A +FG T FVN  T      I + + ++T+GG D + +CTGN+  M +A E  H G G  +         + S       +T    +  + G        P  +         +++FITHR     INKAF  M
Sbjct:  141 HYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFGAGCIGLSVIQGAVSKGASEIIVIDINDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAAAGKEIS-TRPFQLVTGRVWRGCAFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKAFHDM 366          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 60/224 (26.79%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   12 FLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++ T TFSEY V+    VAK++  A L+K CI+ CG +TG GA +N AK                                 VD +  +F +AK  G T+ ++  + ++PIQ+V+ +M N G D + E TGN + + +A    H   GV +        +Q +  S   +  +     +  G   +  I  L    T    + L+  ITH +   ++N+A + M
Sbjct:  141 YITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKVSPGSTCAVFGLGGVGLSVIMGCKAAGAARIIAVDTNKDKFAKAKTVGATECIDPQDFEKPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLASWIQLNINSHLFFSGRTLKGSVLGGWKTKEEIPKLVSDYT-AKKFNLDPLITHTLTLDKVNEAIQLM 363          
The following BLAST results are available for this feature:
BLAST of CF417441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_RANPE1.010e-2129.96Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADHI_RHOS42.251e-2130.30Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_PARDE6.549e-2129.44S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHL2_ARATH8.553e-2132.46Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH7_MOUSE1.117e-2027.12Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH7_RAT1.613e-1927.12Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH6_RAT4.693e-1935.53Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
FADH1_SCHPO6.130e-1928.89Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
FADH_PICPA3.042e-1829.07S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH6_PERMA1.972e-1726.79Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-371 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417441 ID=CF417441; Name=CF417441; organism=Citrus sinensis; type=EST; length=683bp
CTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTT
CATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGT
CTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATG
TGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCTCGGAGCT
GTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCATCAAGAAT
TATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAAAAGTTTG
GAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAATTCAAGAG
GTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCAC
CGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGGA
TGGGGGTGTAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCA
TGACCAAGCCAATCAATGTACTTAACGAAAGAACCCTCAAAGGAACTTTC
TTCGGGAACTACAAACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTA
CATGAACNAGCAACTGGNAACTAGAGAAGTTTATAACCCATCGCATCCCT
TTCTCGGAAATCAATAAAGCCTTCGAGTACATG
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