CF417441

Overview
NameCF417441
Unique NameCF417441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9742 contig Csv1_Contig9742:435..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = 3 
Query:  258 VDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            VD +S +F +AK+ G TD +N  +H  PI +V+  MT  GVD S E  G I+ M++A    H   GV          +    P  +  +T +P   L SG T +G +          P  +       + L+  ITH +PFS+IN+ F+ +
Sbjct:   33 VDINSDKFAKAKELGATDCINPKDHKEPIHKVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGV---------SVIVGVPPAAQNITFDPML-LFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINEGFDLL 173
The following BLAST results are available for this feature:
BLAST of CF417441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_ANAPL2.758e-1131.13Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-371 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417441 ID=CF417441; Name=CF417441; organism=Citrus sinensis; type=EST; length=683bp
CTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTT
CATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGT
CTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATG
TGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCTCGGAGCT
GTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCATCAAGAAT
TATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAAAAGTTTG
GAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAATTCAAGAG
GTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCAC
CGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGGA
TGGGGGTGTAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCA
TGACCAAGCCAATCAATGTACTTAACGAAAGAACCCTCAAAGGAACTTTC
TTCGGGAACTACAAACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTA
CATGAACNAGCAACTGGNAACTAGAGAAGTTTATAACCCATCGCATCCCT
TTCTCGGAAATCAATAAAGCCTTCGAGTACATG
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