CF417441

Overview
NameCF417441
Unique NameCF417441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9742 contig Csv1_Contig9742:435..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 74/227 (32.60%), Postives = 109/227 (48.02%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF+GTSTF+EYTVVH   VAKI   APL+KVC++ CG STG GA +  AK E                               +D +  +F +AK+ G TD VN  +  +PI EV+ EMT  GVD S E  G+ + M +A    H   GV +     P   + S     ++  +     +  G  ++  + P  +       + LE  ITH +PF +IN+ F+ +
Sbjct:  138 IHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVILGVPPAAEKISFDPMLLFSGRTWKGSVFGGWKSKDAV-PKLVADYMEKKFVLEPLITHTLPFIKINEGFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 77/236 (32.63%), Postives = 114/236 (48.31%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HFLG +TFSEYTVV    V KI+  +PL+KVC++ CG STG G+ + V K  R                              VD +  +F +AK+ G T+ VN  ++D+PI EV+ EMT+GGVD S E  G +D  +SA  C  +  G         V +    P  +  LT +P K L SG + +G +          P  +       + LE  IT+  P ++IN+ F+ +
Sbjct:  138 IHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGSICACVWSGRVGLSAIIGCKAAGAARIIAVDINKDKFAKAKELGATECVNPQDYDKPIYEVLQEMTDGGVDFSFEVIGRLDTKVSALMCCQESHG---------VSVIVGVPPNAQSLTIDP-KVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPLAKINEGFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 74/227 (32.60%), Postives = 109/227 (48.02%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF GTSTF+EYTV+H   VAKI+  APL+KVC++ CG STG GA L  AK E                               VD +  +F +AK+ G TD VN  +  +PI EV+ EMT  GVD S E  G+ + M +A    H   GV +     P   + S     ++  +     +  G  ++  + P  +       + L+  ITH +PF +IN+ F+ +
Sbjct:  137 IHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVIVGVPPAAEKLSFDPMLLFSGRTWKGSVFGGWKSKDSV-PKLVADYMEKKFVLDPLITHTLPFHKINEGFDLL 362          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 76/237 (32.07%), Postives = 112/237 (47.26%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF+ TSTF+EYTVVH   V KI+P APL+KVC++ CG STG GA +  AK E                               VD +  +F +AK+ G T+ +N  +  +PI EV+ ++T G GVD S E  G  + MISAF   H  +G           +    P  +  +T  P   L +G T +G +          P  +       + L+  ITH +PF +IN+ F+ +
Sbjct:  137 IHHFISTSTFTEYTVVHENSVVKIDPSAPLEKVCLIGCGFSTGYGAAMQTAKVEPGSICAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKEMGATECINPLDFKKPINEVLFDLTGGEGVDYSFEVIGRTETMISAFTSCHQNLG---------TSVVVGVPPNASMITYNPLM-LFTGRTWKGCVFGGWKSKDSVPKLVSDFMQKKFVLDPLITHTLPFEKINEGFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + H++G STFSEY+VV    +AKINP A  ++VC+L CGV+TG+GA  N AK +                               +D +  +FE AK+FG TD +N +++D+PI++V+ ++   G+D + EC GN++ M  A E  H G G  +         + S     +   +        G   R  + P  +  +   +  LE F+TH +P  +IN+AFE M
Sbjct:  141 IYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSEL-PQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELM 366          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            +++F+ TSTFS+YTVV    VAKI+  +PL+KVC++ CG STG G+ + VAK                                 VD +  +F +AK+ G T+ +N  ++ +PIQEV+ EMT+GGVD S E  G +D M S+    H   GV +     P     S    S+ + +     +  G  ++  + P  +       + LE  ITH +PF +IN+AF+ +
Sbjct:  138 IHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPLDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSV-PKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 78/236 (33.05%), Postives = 113/236 (47.88%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            +++F+ TSTFS+YTVV    VAKI+  +PLDKVC++ CG STG G+ + VAK                                 VD +  +F +AK+ G T+ +N  ++ +PIQEV+ EMT+GGVD S E  G +D M SA            C   C V +    P  +  L+  P   L  G T +G I          P  +       + L+  ITH +PF +IN+AF+ +
Sbjct:  138 IHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLS---------CHAACGVSVVVGVPPNAQNLSMNPML-LLLGRTWKGAIFGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEAFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 77/236 (32.63%), Postives = 114/236 (48.31%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF+GTSTFS+YTVV    VAKI+  APL+KVC++ CG STG G+ + VAK                                 VD +  +F +AK+ G T+ +N  ++ +PIQEVI E+++GGVD S E  G +D +++A    H           C   +    P  S  LT  P   L SG T +G I          P  +       + L+  IT+ +PF +IN+ F+ +
Sbjct:  138 IHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFPKAKEVGATECINPQDYKKPIQEVIQEISDGGVDFSFEVIGRLDTVVAALLSCHGA---------CGTSVIVGVPPDSQSLTVNPML-LLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFSLDPLITNVLPFEKINEGFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 75/236 (31.78%), Postives = 114/236 (48.31%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HFLG STFS+YTVV    VAKI+  +PL+KVC++ CG STG G  + VAK                                 VD +  +F +AK+ G T+ +N  ++ +PIQEV+ EMT+GGVD S E  G +D ++++  C H+          C   +    P  S  L+  P   L +G T +G I          P  +       + L+  IT+ +PF +IN+ F+ +
Sbjct:  138 IHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTIMASLLCCHEA---------CGTSVIVGVPPDSQNLSINPVL-LLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 75/228 (32.89%), Postives = 114/228 (50.00%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELS-SGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HFL TSTFSEYTV+ S CV K++PL PL+K+ +LSCGVSTG+GA  NVA  +                               +D +  +F+  ++ G+++F+N  E D+ + E + E+T GGV+ S EC G+I+ +  AF   + G+GV    L      Q   P   M L +  S   S  G        P  +         L+ FI+H++PF +IN+A + +
Sbjct:  143 IYHFLNTSTFSEYTVIDSACVLKVDPLFPLEKISLLSCGVSTGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQLGREAGISEFINPKESDKAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGV-TVMLGVHASPQLL-PIHPMELFQGRSITASVFGGFKPKTQLPFFITQCLQGLLNLDLFISHQLPFHDINEAMQLL 368          
The following BLAST results are available for this feature:
BLAST of CF417441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_APTAU2.745e-2732.60Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1_GEOAT3.585e-2732.63Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_STRCA4.682e-2732.60Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_NAJNA4.682e-2732.07Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
FRMA_HAEIN6.115e-2731.28S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH1_PERMA6.115e-2732.16Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1_MOUSE6.115e-2733.05Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1_RABIT1.043e-2632.63Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1G_PAPHA1.043e-2631.78Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADHL4_ARATH3.035e-2632.89Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-371 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417441 ID=CF417441; Name=CF417441; organism=Citrus sinensis; type=EST; length=683bp
CTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTT
CATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGT
CTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATG
TGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCTCGGAGCT
GTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCATCAAGAAT
TATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAAAAGTTTG
GAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAATTCAAGAG
GTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCAC
CGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGGA
TGGGGGTGTAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCA
TGACCAAGCCAATCAATGTACTTAACGAAAGAACCCTCAAAGGAACTTTC
TTCGGGAACTACAAACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTA
CATGAACNAGCAACTGGNAACTAGAGAAGTTTATAACCCATCGCATCCCT
TTCTCGGAAATCAATAAAGCCTTCGAGTACATG
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