CF417441

Overview
NameCF417441
Unique NameCF417441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9742 contig Csv1_Contig9742:435..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 69/228 (30.26%), Postives = 108/228 (47.37%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            ++HF+ TS+F+EYTVVH   V KI+  APL+KVC++ CG STG GA +  AK E                               VD +  +F +AK+ G T+ VN  ++ +PI EV+ ++T G GVD S E  G  D M +A    H   G  +     P   + +     ++  +     +  G  ++  + P  +       + L+  ITH +PF +IN+ FE +
Sbjct:  137 LHHFISTSSFTEYTVVHENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAKVEPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGVDINKDKFPKAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGLPPSASEITFSPGLIFTGRTWKGSVFGGWKSKDSV-PRLVSDFMQKKFSLDPLITHTMPFDKINEGFELL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 78/235 (33.19%), Postives = 111/235 (47.23%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGL--------ICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HFLG S FS+YTVV    +AKI+  A L +VC++ CG STG GA +N AK                                 VD +S +F +AK  G TD +N  E ++P+Q+VI EMTNGGVD +++C G  + M +  +C   G G   C+    V +  +       LT  P  EL  G T RG           P  +       + LE  +TH +PF +IN+A + +
Sbjct:  143 IYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKVTPGSTCAVFGLGGVGLSAVIGCKTAGASRIIAVDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCTTVGWG--SCTF---VGVNVN----DKGLTISP-VELILGRTLRGSSFGGWDVDTVPKLVSDYKNGKFNLEALVTHTLPFEKINEALDLL 367          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 65/227 (28.63%), Postives = 110/227 (48.46%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HF+G S+FS+YTVV    +A+++  A L++VC++ CG S+G GA +N AK                                 +D + ++F +AK  G TD +N  E D+P+Q+VI E+T GGVD S++C G    + +A +C   G G   C++      + + P+  + L +  +     G  +   + P  +       + L+  +TH +PF  IN A + M
Sbjct:  142 IYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWG--SCTVVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSV-PNLVSDYKNKKFDLDLLVTHALPFESINDAIDLM 365          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 64/227 (28.19%), Postives = 110/227 (48.46%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HF+G S+FS+YTVV    +A+++  A L++VC++ CG ++G GA +N AK                                 +D +S++F +AK  G TD +N  + D+P+Q+VI E+T GGVD S++C G    + +A +C   G G   C++      + +  +  M L +        G  +   + P  +       + L+  +TH +PF +IN A + M
Sbjct:  142 IYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKVTPGSACAVFGLGCVGLSAVIGCKIAGASRIIAIDINSEKFPKAKALGATDCLNPRDLDKPVQDVITELTGGGVDFSLDCAGTAQTLKAAVDCTVVGWG--SCTVVGAKVDEMNISTVDMILGRSVKGTFFGGWKSVDSV-PNLVTDYKNKKFDLDLLVTHALPFDKINDAIDLM 365          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 72/225 (32.00%), Postives = 101/225 (44.89%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            HF+G STFSEYTVV    V  I  LAPLD VC+L CG++TG GA    A  +                               +D + ++   A  FG TDF+N ++   PIQ+V+   T+GG+D + +CTGN+  M SA E  H G G  +         + S       +T    +  + G        P  +         ++K+ITHR P  EIN+AF  M
Sbjct:  144 HFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEIS-TRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDM 367          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 73/238 (30.67%), Postives = 109/238 (45.80%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMY---LTKEPSKELSSGTTNRGL--------ICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            + HF G S FS+YTVV    +AKI+  A L++VC++ CG STG GA +N AK                                 +D +S +F +AK  G TD +N  E ++P+Q+VI EMTNGGVD +++C G  + M +  +C   G G             C+    ++    LT  P  EL  G T +G           P  +       + L+  +TH +PF +IN+A   +
Sbjct:  143 IYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKVTPGSTCAVFGLGGVGLSAIMGCKTAGASRIIAIDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCATVGWG------------SCTFVGVNLADKGLTISPI-ELILGRTLKGTNFGGWDAETVPKLVSDYKNGKFDLDALVTHTLPFDKINEALNLL 367          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 68/228 (29.82%), Postives = 108/228 (47.37%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            V HF+ T TF+EYTV     V KI+  APL+KVC++ CG STG GA +N AK +                               +D + ++F +AK+ G T+ VN  ++ +PI EV+ +MT+G GV+ S E  G  D M +A    H+  G  +     P   Q +     ++  +     +  G  ++  + P  +       + L+  ITH +PF +IN+ FE +
Sbjct:  137 VYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKPINEVLFDMTDGEGVEYSFEVIGRTDTMTAALASCHNNYGTSVIVGVPPSASQIAFDPLLLFTGRTWKGSVFGGWKSKDAV-PRLVSDFMGKKFILDPLITHTMPFEKINEGFELL 363          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 73/229 (31.88%), Postives = 98/229 (42.79%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRP----IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            HF+G STFSEYTVV    + K+NP APL+KV +L CG+STG GA LN  K E                               +D    +FE AK FG T+ +N    + P     Q  + E  +GG D + EC GN+  M  A E  H G GV  C +      Q         +T    K  + G        P  +         +++FITHR    +IN AF+ +
Sbjct:  142 HFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGV-SCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVL 369          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 68/236 (28.81%), Postives = 107/236 (45.34%), Query Frame = 3
Query:    3 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLI---------CPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            V+HF+ TSTF+EYTVV    VAKI+  AP +KVC++ CG STG GA +   K +                               +D +  +FE+A   G T+ ++  +  +PI EV++EMT   V  + E  G+++ MI A    H   G           +    P  +  LT +P   L +G T +G +          P  +       + L++ ITH +PF +I++ FE +
Sbjct:  137 VHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYG---------TSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELL 362          
BLAST of CF417441 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 74/227 (32.60%), Postives = 100/227 (44.05%), Query Frame = 3
Query:    9 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSE--HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGMGV*LCSLECPVRMQCS*PSQSMYLTKEPSKELSSGTTNRGLICPLSLICT*TSNWXLEKFITHRIPFSEINKAFEYM 683
            HF+G STFS+YTVV    V  INP A  DK C+L CG++TG GA    A  ++                              VD S K+ E  +K G T FVN ++      I + + EMT+GG D + +CTGN+  M +A E  H G G  +         + S       +T    K  + G        P  +         +E+FITHR P + INKAFE M
Sbjct:  143 HFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQKGDNVAVFGGGIVGLSVIQGCAERGAAQIILVDISDKKEEWGQKLGATAFVNPTKLPEGTTIVDKLIEMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAAAGKEIS-TRPFQLVTGRTWKGAAFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEM 368          
The following BLAST results are available for this feature:
BLAST of CF417441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1A_UROHA1.079e-2330.26Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHQ_RABIT2.405e-2333.19Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH4_MOUSE2.405e-2328.63Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH4_RAT4.102e-2328.19Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FADH2_SCHPO5.357e-2332.00Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHP_RABIT6.997e-2330.67Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH1B_UROHA6.997e-2329.82Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADHX_CAEEL1.193e-2231.88Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH7_HUMAN4.535e-2228.81Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
FADH_CANMA5.923e-2232.60S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-371 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417441 ID=CF417441; Name=CF417441; organism=Citrus sinensis; type=EST; length=683bp
CTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTT
CATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGT
CTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATG
TGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCTCGGAGCT
GTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCATCAAGAAT
TATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAAAAGTTTG
GAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAATTCAAGAG
GTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCAC
CGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGGA
TGGGGGTGTAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCA
TGACCAAGCCAATCAATGTACTTAACGAAAGAACCCTCAAAGGAACTTTC
TTCGGGAACTACAAACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTA
CATGAACNAGCAACTGGNAACTAGAGAAGTTTATAACCCATCGCATCCCT
TTCTCGGAAATCAATAAAGCCTTCGAGTACATG
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