CF417448

Overview
NameCF417448
Unique NameCF417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.444e-62
Identity = 117/195 (60.00%), Postives = 135/195 (69.23%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEE 586
            MGA KYV E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ                       YGKPTN G+ QLK+QR+ R+ AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  H AIR D RINWIC  VHKHRE RGLT+ GKK RG+  KGH ++  R  RR TW  +
Sbjct:    1 MGALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPAPKGATYGKPTNMGINQLKYQRALRATAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDARINWICNAVHKHREARGLTATGKKSRGI-NKGHRYNNTRSGRRHTWKRQ 194          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_SINKN (60S ribosomal protein L15 OS=Siniperca kneri GN=rpl15 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 7.580e-62
Identity = 119/193 (61.66%), Postives = 134/193 (69.43%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAY+Y+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H A+R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_DICDI (60S ribosomal protein L15 OS=Dictyostelium discoideum GN=rpl15-1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.205e-61
Identity = 120/193 (62.18%), Postives = 135/193 (69.95%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG-HLHHKARPSRRATW 577
            MGAYKY+ EL++KKQSD +RFL RVRCWEYR  P   R + PTR DKARRLGYKA Q                        GKP   GV +LK  R+ RSVAEER GR+   L+VLNSYW+N+DSTYKY+EVILVD +HNAIRNDPR NWICKPVHKHRELRGLTSAG K RGLR KG H   K RPSR+A +
Sbjct:    1 MGAYKYLQELYKKKQSDAVRFLLRVRCWEYRNLPVCHRASHPTRVDKARRLGYKATQGFVVYRIRVRRGGRKRQVPGGRTGGKPKTHGVNELKPSRNLRSVAEERVGRRCPNLRVLNSYWVNQDSTYKYYEVILVDNSHNAIRNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRASKTRPSRQANY 193          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.266e-60
Identity = 115/193 (59.59%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATW 577
            MGAY+Y+ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ                       YGKP + GV QLK  R  +S+AEER GR+LGGL+VLNSYWI +D++YKYFEVIL+D  H+AIR DP+INWICK VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA W
Sbjct:    1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGI-GKGYRYSQTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.580e-59
Identity = 116/193 (60.10%), Postives = 135/193 (69.95%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATW 577
            MGAY+YV EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R  +SVAEER GR+LGGL+VLNSYW+ +D+ +KYFEVI+VD AHNAIR DP +NWIC  VHKHRELRGLTSAGK  RGL GKG+ + +    SRRA W
Sbjct:    1 MGAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQGFSIFRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRCLQSVAEERVGRRLGGLRVLNSYWVAQDAAHKYFEVIMVDPAHNAIRRDPNVNWICNAVHKHRELRGLTSAGKSSRGL-GKGYRYSQTIGGSRRACW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.521e-59
Identity = 111/193 (57.51%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATW 577
            MGAY+YV EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R+ +SVAEER GR++GGL+VLNSYW+ +D+ +KY+EVI VD  HNA+R DP++NW+C  VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA W
Sbjct:    1 MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQGFLIYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRNLQSVAEERVGRRMGGLRVLNSYWVAQDAAFKYYEVICVDPFHNAVRRDPKVNWVCNAVHKHRELRGLTSAGKSSRGV-GKGYRYSQTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15B_SCHPO (60S ribosomal protein L15-B OS=Schizosaccharomyces pombe GN=rpl15b PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.282e-58
Identity = 115/192 (59.90%), Postives = 132/192 (68.75%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAYKY+ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    L+VLNSYW+N+D+TYK+FEVILVD +H AIR DPRINWI  PVHKHRE RGLTS GKK RG+ GKGH ++ +   + ATW
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRYNNS--PQHATW 189          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15A_SCHPO (60S ribosomal protein L15-A OS=Schizosaccharomyces pombe GN=rpl15a PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.084e-58
Identity = 115/192 (59.90%), Postives = 131/192 (68.23%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAYKY+ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    L+VLNSYW+N+D+TYK+FEVILVD +H AIR DPRINWI  PVHKHRE RGLTS GKK RG+ GKGH  + +   + ATW
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRFNNS--PQHATW 189          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 108/192 (56.25%), Postives = 128/192 (66.67%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAYKY+ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ                       YGKP + GV QLK  R+ +S+AEER GR+LGGL+VLNSYW+ +DSTYKYFEVILVD  HN IR    +NWICK   KHRE+RG TSAG+K+RGL    H       SRR+ W
Sbjct:    1 MGAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQGFVIYRIRIRRGGRKRPVPKGATYGKPKSHGVNQLKPTRNLQSLAEERTGRRLGGLRVLNSYWVAQDSTYKYFEVILVDIRHNVIRKSGSLNWICKHTQKHREMRGKTSAGRKHRGLGRGFHYSQTKGGSRRSCW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.261e-55
Identity = 107/198 (54.04%), Postives = 132/198 (66.67%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEEPNS 595
            MGAYKY+ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ                       YGKP   GV +LK  +SK++VAE RAGR+LG L+VLNSYW+ EDSTYK++EV+L+D  H AIR +P   WI KPVHKHRE RGLTSAG+K RGL GKG      R   +A   +  N+
Sbjct:    1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGL-GKGWRFSATRGGSQAKNWKRKNT 197          
The following BLAST results are available for this feature:
BLAST of CF417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_ASPNG4.444e-6260.0060S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_SINKN7.580e-6261.6660S ribosomal protein L15 OS=Siniperca kneri GN=rp... [more]
RL15_DICDI2.205e-6162.1860S ribosomal protein L15 OS=Dictyostelium discoid... [more]
RL15_DROME9.266e-6059.5960S ribosomal protein L15 OS=Drosophila melanogast... [more]
RL15_ANOGA1.580e-5960.1060S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_CHITE3.521e-5957.5160S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15B_SCHPO2.282e-5859.9060S ribosomal protein L15-B OS=Schizosaccharomyces... [more]
RL15A_SCHPO5.084e-5859.9060S ribosomal protein L15-A OS=Schizosaccharomyces... [more]
RL15_ORCLI2.136e-5656.2560S ribosomal protein L15 OS=Orconectes limosus GN... [more]
RL15_CAEEL5.261e-5554.0460S ribosomal protein L15 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-378 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417448 ID=CF417448; Name=CF417448; organism=Citrus sinensis; type=EST; length=681bp
AATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
ATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCAC
CCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCCG
CTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAA
GACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAAA
CCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTC
AGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCA
ACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAATC
CTGGTGGATGCTGCCCACAATGCAATCCGCAATGACCCCAGGATCAACTG
GATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCTG
CTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAAG
GCACGACCTTCAAGAAGGGCAACCTGGNAAGAGGAACCAAACTCTCTCGC
TCAGGCGTTACCGTTAAACTTCTGTATTGNTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTG
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