CF417448

Overview
NameCF417448
Unique NameCF417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.945e-46
Identity = 94/153 (61.44%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  122 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H  IR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 153          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.817e-39
Identity = 85/190 (44.74%), Postives = 113/190 (59.47%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            MG YKY+ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   ++VLNSYW+ ED  +K++EVILVD  H AI+ DP++NW+C   H+ R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.286e-39
Identity = 83/142 (58.45%), Postives = 92/142 (64.79%), Query Frame = 2
Query:  155 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 141          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 83/190 (43.68%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 83/190 (43.68%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            MG YKY+ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            MG YKY+ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 82/190 (43.16%), Postives = 109/190 (57.37%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   ++VLNSYW+ +D   K++EVILVD    +I+ND   NW+CK  HK R  RGLTSAGKK RGL  KG    KARPS RA
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.221e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            MG YKY+ E W+  +   +  L + R  ++R+ P++VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
The following BLAST results are available for this feature:
BLAST of CF417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK9.945e-4661.4460S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15E_METJA1.817e-3944.7450S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15_PIG5.286e-3958.4560S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15E_METM75.844e-3843.6850S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM65.844e-3843.6850S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_THEON9.969e-3844.2150S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ9.969e-3844.2150S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_PYRHO9.969e-3844.7450S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15E_METM59.969e-3843.1650S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_PYRAB2.221e-3744.2150S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-378 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417448 ID=CF417448; Name=CF417448; organism=Citrus sinensis; type=EST; length=681bp
AATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
ATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCAC
CCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCCG
CTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAA
GACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAAA
CCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTC
AGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCA
ACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAATC
CTGGTGGATGCTGCCCACAATGCAATCCGCAATGACCCCAGGATCAACTG
GATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCTG
CTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAAG
GCACGACCTTCAAGAAGGGCAACCTGGNAAGAGGAACCAAACTCTCTCGC
TCAGGCGTTACCGTTAAACTTCTGTATTGNTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTG
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