CF417448

Overview
NameCF417448
Unique NameCF417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 82/188 (43.62%), Postives = 106/188 (56.38%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y YV + W+      ++ L   R  ++R+  SIVRV RPTR D+AR LGYKAKQ                      V G+ T   GV +    +S + +AEERA RK   ++VLNSYW+ ED   K++EVIL+D  H +I ND  +NWI KP H+ R  RGLTSAG K RG+R +G    K RPS RA
Sbjct:    6 YAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRGKGTEKCRPSVRA 190          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            M  YK+V E W+K     ++ LQ  R  ++R+ P++VRV +PTR D+AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L+VLNSY + ED   K++EVIL+D  H +I+ND     +C   H +R  RGLTSAGKK RGL  KG    K RP  RA
Sbjct:    1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRA 188          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 77/188 (40.96%), Postives = 103/188 (54.79%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNA 190          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 77/188 (40.96%), Postives = 103/188 (54.79%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNA 190          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 562
            Y ++ E WR  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   L+VLNSYW+ ED + K+ EVILVD  H AI ND  + WI    HK R  RGLTSAG K RG R +G    K RPS
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 76/184 (41.30%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 562
            Y ++ E W++     +  LQ  R  E+R   +IVR+ RPTR DKAR LGYKAKQ                         K   QGV +L  + S + +AEERA RK   L+ L SYW+ ED + K+ E+IL+D  H AI ND  +NWIC   HK R  RGLT+AG+  RGL+ +G      RPS
Sbjct:    6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHTRPS 187          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.106e-31
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEE 586
            Y Y+ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+                         K     V +   +++ + +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG    K RPS RA + ++
Sbjct:    5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKK 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y ++ E W+  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   L+VLNSYW+ ED + K+FEVIL+D  H AI+ND  ++WIC    + R  RG TSAG++ RG + +G      RPS RA
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRA 190          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31
Identity = 73/188 (38.83%), Postives = 104/188 (55.32%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y Y+ + W+      +R L+  R   +R+  S+ RV RPTR D+AR LGYKAKQ                      + G+ T   G  ++   +S + ++EERA RK   ++VLNSYW+ ED   K++EVILVD +H  I++D  +NWIC   H  R  RG TSAG+K RG++ +G    K RPS R+
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKTRPSVRS 190          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30
Identity = 75/187 (40.11%), Postives = 101/187 (54.01%), Query Frame = 2
Query:   11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571
            Y YV E W++     ++ L   R   +R+  SIVRV  PTR D+AR LGYKAKQ                         +    G+ +L   +S + +AEERA RK   ++ LNSYW+ ED   K+FEVILVD  H +I++D  + W+  PVH+ R  RG TSAG K RG+R +G    K RPS R+
Sbjct:    6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKTRPSIRS 190          
The following BLAST results are available for this feature:
BLAST of CF417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METHJ3.669e-3243.6250S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_META33.669e-3240.0050S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_HALSA8.174e-3240.9650S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS38.174e-3240.9650S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALLT1.068e-3143.4850S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_HALWD1.394e-3141.3050S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_ARCFU3.106e-3139.5850S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_NATPD6.919e-3140.1150S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_METBU9.037e-3138.8350S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_METMJ2.629e-3040.1150S ribosomal protein L15e OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-378 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417448 ID=CF417448; Name=CF417448; organism=Citrus sinensis; type=EST; length=681bp
AATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
ATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCAC
CCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCCG
CTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAA
GACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAAA
CCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTC
AGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCA
ACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAATC
CTGGTGGATGCTGCCCACAATGCAATCCGCAATGACCCCAGGATCAACTG
GATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCTG
CTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAAG
GCACGACCTTCAAGAAGGGCAACCTGGNAAGAGGAACCAAACTCTCTCGC
TCAGGCGTTACCGTTAAACTTCTGTATTGNTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTG
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