CF417448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32 Identity = 82/188 (43.62%), Postives = 106/188 (56.38%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y YV + W+ ++ L R ++R+ SIVRV RPTR D+AR LGYKAKQ V G+ T GV + +S + +AEERA RK ++VLNSYW+ ED K++EVIL+D H +I ND +NWI KP H+ R RGLTSAG K RG+R +G K RPS RA Sbjct: 6 YAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRGKGTEKCRPSVRA 190
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32 Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = 2 Query: 2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 M YK+V E W+K ++ LQ R ++R+ P++VRV +PTR D+AR LGYKAKQ KP + ++ +S + +AEERA ++ L+VLNSY + ED K++EVIL+D H +I+ND +C H +R RGLTSAGKK RGL KG K RP RA Sbjct: 1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRA 188
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32 Identity = 77/188 (40.96%), Postives = 103/188 (54.79%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y ++ E W + LQ R ++R+ +I RV RPTR DKAR LGYKAKQ G+ T QGV ++ ++ + +AEERA RK L+ LNSYW+ ED + K+FE IL+D H AI+ND +NWIC HK+R RG TSAG++ RGL+ +G RPS A Sbjct: 6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNA 190
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32 Identity = 77/188 (40.96%), Postives = 103/188 (54.79%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y ++ E W + LQ R ++R+ +I RV RPTR DKAR LGYKAKQ G+ T QGV ++ ++ + +AEERA RK L+ LNSYW+ ED + K+FE IL+D H AI+ND +NWIC HK+R RG TSAG++ RGL+ +G RPS A Sbjct: 6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNA 190
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31 Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 562 Y ++ E WR + + LQ R E+R +I R+ RPTR DKAR LGYKAKQ K QGV +L ++S + ++EERA RK L+VLNSYW+ ED + K+ EVILVD H AI ND + WI HK R RGLTSAG K RG R +G K RPS Sbjct: 6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31 Identity = 76/184 (41.30%), Postives = 99/184 (53.80%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 562 Y ++ E W++ + LQ R E+R +IVR+ RPTR DKAR LGYKAKQ K QGV +L + S + +AEERA RK L+ L SYW+ ED + K+ E+IL+D H AI ND +NWIC HK R RGLT+AG+ RGL+ +G RPS Sbjct: 6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHTRPS 187
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.106e-31 Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEE 586 Y Y+ E W++ + L R ++R+ P++VR+ RPTR D+AR LGYKAK+ K V + +++ + +AEERA RK ++VLNSYW+ ED YK+FEVILVD H AI++DP+++W+ + + R RGLTSAG+K RGLR KG K RPS RA + ++ Sbjct: 5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKK 192
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31 Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y ++ E W+ + + LQ R E+R +I R+ RPTR DKAR LGYKAKQ K QGV ++ +++ + +AEER+GRK L+VLNSYW+ ED + K+FEVIL+D H AI+ND ++WIC + R RG TSAG++ RG + +G RPS RA Sbjct: 6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRA 190
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31 Identity = 73/188 (38.83%), Postives = 104/188 (55.32%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y Y+ + W+ +R L+ R +R+ S+ RV RPTR D+AR LGYKAKQ + G+ T G ++ +S + ++EERA RK ++VLNSYW+ ED K++EVILVD +H I++D +NWIC H R RG TSAG+K RG++ +G K RPS R+ Sbjct: 6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKTRPSVRS 190
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30 Identity = 75/187 (40.11%), Postives = 101/187 (54.01%), Query Frame = 2 Query: 11 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 571 Y YV E W++ ++ L R +R+ SIVRV PTR D+AR LGYKAKQ + G+ +L +S + +AEERA RK ++ LNSYW+ ED K+FEVILVD H +I++D + W+ PVH+ R RG TSAG K RG+R +G K RPS R+ Sbjct: 6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKTRPSIRS 190 The following BLAST results are available for this feature:
BLAST of CF417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417448 ID=CF417448; Name=CF417448; organism=Citrus sinensis; type=EST; length=681bpback to top |