CF417451

Overview
NameCF417451
Unique NameCF417451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13853 contig Csv1_Contig13853:398..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1
Query:  214 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA +K+ LI    G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1
Query:  214 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA +K+ LI    G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1
Query:  214 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA +K+ LI    G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  214 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA YK+ LI    G     E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEEEL
Sbjct:    1 MATYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.440e-34
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 1
Query:  214 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA YK+ LI   G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAGKLV+G++DQSD SFLDD+Q+EAGY+LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.187e-34
Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 1
Query:  217 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            A YK+KL+ P+G+  EFE  +D YILD AEE G+DLPYSCRAG+CS+CAGK+ +G+VDQSDGSFLDD+Q+  G++LTC++YPTSD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  214 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            MA YK+ LI    G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ SGS+DQSD SFLDD+Q+EAGY+LTC++YPTSDC IQ+H+EE L
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  178 FGLKCSPNFQ--ASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            FGLK S +     +MA YK+ L+ P G++ E E  +D YILDAAEEAG+DLPYSCRAG+CS+CAGK+ SGSV+Q DGSFLDD+Q++ G++LTC++YPT D  I++HKEEEL
Sbjct:   37 FGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 1
Query:  217 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            A YK+KL+ P G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD QME G++LTC+++PTSD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CF417451 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  211 SMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 504
            + A YK+KL+ P GE  E E  +D YILD AEE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QMEAG++LTC +YP SD VI++HKEEEL
Sbjct:   45 AQATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
The following BLAST results are available for this feature:
BLAST of CF417451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_NOSMU2.207e-3571.43Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP2.207e-3571.43Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO2.207e-3571.43Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_CHLFR1.095e-3470.41Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER1_APHFL2.440e-3468.04Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FERB_ALOMA3.187e-3466.67Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_SPIMA7.101e-3468.37Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER1_MESCR9.274e-3461.26Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FERA_ALOMA1.582e-3366.67Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_WHEAT2.066e-3368.37Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-381 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417451 ID=CF417451; Name=CF417451; organism=Citrus sinensis; type=EST; length=699bp
AACCCACTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTG
GGTAAAGATGTCGACTGTGACACTTAGTGCCCCGTGCATGGTTAAAGCTG
CACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGCCCATCCTCACTT
GGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAA
TTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAACG
GTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCA
GCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTG
CTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATG
GTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGC
ATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGA
GCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACCTACAATATT
TTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGNAATCTTTAAATTTTCA
TTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATGTGAAAGG
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