CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.058e-65 Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = 1 Query: 82 TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 T K SS SPW+GPD VKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 133 HSP 2 Score: 91.6633 bits (226), Expect = 3.233e-18 Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE Sbjct: 121 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKE 176
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 5.988e-65 Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 S+FVG+AV S NE GRI+MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G Sbjct: 9 SAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169 HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16 Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKE Sbjct: 158 LAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 2.972e-64 Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 +SF+G A P +EL +GGRI+MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G Sbjct: 10 TSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167 HSP 2 Score: 81.2629 bits (199), Expect = 4.370e-15 Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE Sbjct: 156 LAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 2.972e-64 Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 +SF+G A P +EL +GGRI+MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G Sbjct: 10 TSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167 HSP 2 Score: 81.2629 bits (199), Expect = 4.370e-15 Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE Sbjct: 156 LAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 5.069e-64 Identity = 123/164 (75.00%), Postives = 133/164 (81.10%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 SS G+ + L P NEL + RI+MR+T + S WYGPDR KYLGP S PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVL G Sbjct: 10 SSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMG 170 HSP 2 Score: 78.9518 bits (193), Expect = 2.169e-14 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG +EGYR+ GG LGE DPL PGG+FDPLGLADDPEA AELKVKE Sbjct: 159 LAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKE 214
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 8.647e-64 Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1 Query: 64 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 R++MR+T SKS S + WYG DR K+LGP SGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173 HSP 2 Score: 94.7449 bits (234), Expect = 3.819e-19 Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKE Sbjct: 161 LAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKE 216
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 8.647e-64 Identity = 121/165 (73.33%), Postives = 134/165 (81.21%), Query Frame = 1 Query: 1 SSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 S+F G+ S NEL NGGR +MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVL G Sbjct: 9 SAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169 HSP 2 Score: 84.3445 bits (207), Expect = 5.162e-16 Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MG +EGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKE Sbjct: 158 LAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.956e-63 Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 1 Query: 7 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 F+G+ N P + ++ G ++ S WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVL G Sbjct: 19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168 HSP 2 Score: 60.8474 bits (146), Expect = 1.956e-63 Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 2 Query: 473 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 610 MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE Sbjct: 167 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 3.286e-63 Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 1 Query: 43 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 480 NELS R+ M SK+ SGS WYG DR YLGP SG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+L G+ Sbjct: 21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170 HSP 2 Score: 95.1301 bits (235), Expect = 2.924e-19 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 455 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 LA W+ MGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE Sbjct: 158 LAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKE 213
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.325e-63 Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 1 Query: 13 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 477 G+A + +P + + GRI+M WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+L G Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171 HSP 2 Score: 58.151 bits (139), Expect = 3.325e-63 Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 2 Query: 473 MGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 610 MG VEG+RI G +GE D LYPGG FDPLGLADDP FAELKVKE Sbjct: 170 MGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |