CF417455
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.213e-13 Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 2 Query: 473 MGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 610 MGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVKE Sbjct: 22 MGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70 HSP 2 Score: 28.1054 bits (61), Expect = 2.213e-13 Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1 Query: 418 SLIHAQSILAIWACQVVLXGS 480 +LIHA+S+LAI A QV+L G+ Sbjct: 4 ALIHAKSLLAILATQVLLMGA 24
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 154 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 381 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 2.640e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 163 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 366 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440 HSP 3 Score: 63.929 bits (154), Expect = 2.947e-11 Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1 Query: 166 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 369 PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72 HSP 4 Score: 25.0238 bits (53), Expect = 2.947e-11 Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 2 Query: 491 YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 601 + +A G + E +DP +YPG FDPL L D AE+K Sbjct: 93 FEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128
BLAST of CF417455 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.060e-11 Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 169 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 372 SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G Sbjct: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTG 140 HSP 2 Score: 34.6538 bits (78), Expect = 1.060e-11 Identity = 19/56 (33.93%), Postives = 30/56 (53.57%), Query Frame = 2 Query: 446 PSGLARWSXMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKE 610 P + + +G +G+ +G +P YPGG F +PLG D ++ ELK+KE Sbjct: 179 PGSMGKQYFLGLEKGFGGSG-------NPAYPGGPFFNPLGFGKDEKSLKELKLKE 227 The following BLAST results are available for this feature:
BLAST of CF417455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417455 ID=CF417455; Name=CF417455; organism=Citrus sinensis; type=EST; length=612bpback to top |