CF417475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15 Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 +S RK RKA +TAP R MS LS DL++++N RS PVRK D V++VRG ++G EGKV V + + + ++ + +K +GS + I+PS +V+T Sbjct: 1 MSKQPRKQRKALYTAPLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLT 100
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_META3 (50S ribosomal protein L24P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl24p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 S RK RKA + AP R LMSA LS DL++KYN ++PV+ D V+++RGT+KG EG+V +V + + I++E K +G+ I+PS V+I Sbjct: 6 SKQPRKQRKALYNAPLHARNKLMSAMLSKDLKEKYNKNALPVKTGDTVKILRGTFKGIEGEVSKVDYKSYKIYVEGAVNRKQDGNESLYPIHPSNVMI 103
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METJA (50S ribosomal protein L24P OS=Methanocaldococcus jannaschii GN=rpl24p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14 Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 S RK RKA F AP +RR +MSA LS +L++K ++PVRK D V+++RG +KG EG+V++V +++ I++E ++ +G V I+PS V+I Sbjct: 6 SKQPRKQRKALFNAPLHLRRKVMSAMLSKELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKVDLKRYRIYVEGANNKRQDGREVPYPIHPSNVMI 103
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRAR (50S ribosomal protein L24P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl24p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14 Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 S+ RK R A F AP +R L +A LS +L +K V+ +PVR+ D V ++RG +KG GKVV+V +K I++E TR G TV I+PSKV+I Sbjct: 6 SAQPRKQRLALFNAPLHLRHKLFNAKLSPELEKKLGVKRLPVRRGDTVMILRGDFKGVTGKVVRVDLKKVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 64 SSSRRKNRKAH-FTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 SS K RK + AP +R + APLS +L+QK ++ + VRK D V +VRG++KG EGKV V +K IH+E T K +G+ V I+PSKVV+T Sbjct: 6 SSKPGKVRKREVYDAPLHIRSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVT 105
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 76 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 R+ R + +TAP +R L +A LS DL++K V+ +PVR+ D V ++RG +KG GKVV+V +K I++E TR G TV I+PSKV+I Sbjct: 10 RRQRLSLYTAPLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMI 103
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METM7 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14 Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 S RK RKA + AP +R +M+A LS +L++K+N S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+PS V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METM5 (50S ribosomal protein L24P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14 Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 S RK RKA + AP +R +M+A LS +L++K+N S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+PS V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMAAMLSKELKEKFNKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGTETAYPIHPSNVMIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_SULSO (50S ribosomal protein L24P OS=Sulfolobus solfataricus GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14 Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 VS K RK +T P R+ L+ A +S D+ +Y ++ + VRK D V+V+RG G+EGKVV+V + + IE ITR+KV+G+ V V I+ SKV+IT Sbjct: 2 VSLKPSKQRKLLYTLPLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMIT 101
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRAE (50S ribosomal protein L24P OS=Pyrobaculum aerophilum GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 S+ RK R++ + AP +RR L +A LS +L +K V+ +PVR+ D V ++RG +KG GKVV+V ++ I++E TR G TV I+PSKV+I Sbjct: 6 SAQPRKQRRSLYKAPLHLRRKLFNAKLSPELAKKLGVKRLPVRRGDTVLILRGDFKGVTGKVVKVDLKRVRIYVEGATRTNSRGQTVYYPIHPSKVMI 103 The following BLAST results are available for this feature:
BLAST of CF417475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417475 ID=CF417475; Name=CF417475; organism=Citrus sinensis; type=EST; length=653bpback to top |