CF417475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METAC (50S ribosomal protein L24P OS=Methanosarcina acetivorans GN=rpl24p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13 Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 VS RK RKA + AP +R+ M A LS L ++Y RS V D V+V+RG +KG EGKV V I ++ + KV+G+ V +NPS V+IT Sbjct: 5 VSKQPRKQRKARYAAPLHIRQKFMGARLSEALTKEYGTRSAAVITGDTVKVMRGDFKGTEGKVQSVSLMDGTITVDGVISTKVDGTEVPRPLNPSNVMIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METHJ (50S ribosomal protein L24P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl24p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 +SS RK RKA + AP +R L+ A LS +L+ KY RS+ V K D V+V+RG + G EG V V R I ++ ++ +K +G+ V ++PS V+IT Sbjct: 5 ISSQPRKQRKARYNAPHHMRGSLLHAALSKELQGKYKRRSIRVIKGDTVKVLRGDHAGTEGLVDYVITRDARIVVDGVSVKKADGTEVPRPVDPSNVMIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METLZ (50S ribosomal protein L24P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl24p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11 Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 58 RVSSSR-RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 R+SS++ RK RK + AP R + +PL++DLR+KY RS V D V+V+RG +KG EG V V + + + + +K NG V ++PSK++IT Sbjct: 3 RISSTQPRKQRKFRYNAPIHTRGAFLHSPLASDLREKYGKRSFRVVTGDTVKVLRGEFKGIEGVVDGVDVKNTKVLVHGVYVKKANGEDVPRPLDPSKIMIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METB6 (50S ribosomal protein L24P OS=Methanoregula boonei (strain 6A8) GN=rpl24p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-11 Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 SS RK RKA + APS +R ++APLS LR+ Y +++ V K D V+V RG + G EG V + R I + ++ KV+G+ V I+ SKV IT Sbjct: 6 SSQPRKQRKARYDAPSHMRSKFLNAPLSATLRETYEKKTIRVIKGDTVKVTRGDHVGEEGIVDGIDTRNVKIIVHGVSSTKVDGTEVPRPIDASKVEIT 104
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_HALMA (50S ribosomal protein L24P OS=Haloarcula marismortui GN=rpl24p PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-11 Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 +S K RK+ AP R + A LS DLR++Y R++ V D V+V+RG + G EG+V+ V K VIH+E +T EK +G V ++ S V +T Sbjct: 1 MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVT 100
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_SULTO (50S ribosomal protein L24P OS=Sulfolobus tokodaii GN=rpl24p PE=3 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG--TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 VS K R + P R L++A LS +L+Q+Y ++ + +RK D V+V+RG EGKVV+V R+ I IE +TR+K +G+ V I+ SKV+IT Sbjct: 2 VSHKPSKQRLLLYNLPKHQRHKLLTAKLSKELQQQYGIKRLAIRKGDTVKVMRGDKDVLNFEGKVVEVNRKTGRIAIEGLTRKKADGTPVYRWIHASKVIIT 103
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_METS5 (50S ribosomal protein L24P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl24p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11 Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1 Query: 136 APLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 APLS +L ++Y ++ + +RKDD V+V+RG G EGKV QV+ I IE +TR+K +G+ V + I+ SKV IT Sbjct: 8 APLSDELAKEYGMKRIGIRKDDTVRVMRGDNYGFEGKVTQVFPESGRIAIEGLTRKKADGTPVYIKIHASKVEIT 82 The following BLAST results are available for this feature:
BLAST of CF417475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417475 ID=CF417475; Name=CF417475; organism=Citrus sinensis; type=EST; length=653bpback to top |