CF417504

Overview
NameCF417504
Unique NameCF417504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417504_ssr10 microsatellite CF417504_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:129..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 73/170 (42.94%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  142 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            F+ FK K  + Y +  E  +R  VF+ NL  A+     +P A  GVT FSDLT  EFR ++           +  + P+ +     P   DWR  GAVT VKDQG CGSCW+FSA G +E   FL+   L +LSEQ LV CD           DSGC+GGLMN+AFE+I+
Sbjct:   38 FAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHNGAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD---------KTDSGCSGGLMNNAFEWIV 198          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 72/160 (45.00%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  169 KTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            K+Y T EE   R+ +FKAN+   ++        V G+  F+D+T  E+R  +LG           Q+  +  T+   +  DWR  GAVT VK+QG CG CWSFS TG+ EGAHF S GELVSLSEQ L+DC  E         +SGC+GGLM  AFEYI+
Sbjct:   39 KSY-TSEEFGARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDASSLIGTQEEKVFTTSSAASK-DWRSEGAVTPVKNQGQCGGCWSFSTTGSTEGAHFQSKGELVSLSEQNLIDCSTE---------NSGCDGGLMTYAFEYII 187          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.989e-30
Identity = 79/192 (41.15%), Postives = 106/192 (55.21%), Query Frame = 1
Query:   94 SDG----EQSEDHLLNAEHH---FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDS-GCNGGLMNSAFEYI 645
            SDG    E+S   +L    H   F+ F  ++ K Y   EE   RF +FK NL   +       +   GV +F+DLT  EF+R  LG  +     A  + +  +    LP   DWR+ G V+ VKDQG CGSCW+FS TGALE A+  + G+ +SLSEQQLVDC        +G+ ++ GCNGGL + AFEYI
Sbjct:   36 SDGLREVEESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCS--ATLKGSHKVTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDC--------AGAFNNYGCNGGLPSQAFEYI 217          

HSP 2 Score: 27.335 bits (59), Expect = 5.989e-30
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTD 700
            GG++ EK YPYTG D
Sbjct:  221 GGLDTEKAYPYTGKD 235          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.990e-30
Identity = 72/184 (39.13%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  106 QSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL---PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +S D L+     F  + S F K Y T EE   RF VFK NL+          +   G+ +F+DL+  EF++ +LGL   +    + +        D+   P   DWR  GAV  VK+QG+CGSCW+FS   A+EG + + TG L +LSEQ+L+DCD         + ++GCNGGLM+ AFEYI+
Sbjct:   42 ESHDKLIEL---FENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCD--------TTYNNGCNGGLMDYAFEYIV 214          

HSP 2 Score: 25.0238 bits (53), Expect = 5.990e-30
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTDG 703
            GG+ +E+DYPY+  +G
Sbjct:  217 GGLRKEEDYPYSMEEG 232          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.794e-30
Identity = 78/176 (44.32%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  151 FKSKFSKTYATQEEHDYRFRVFKANLRR-AKRRQLLDPTAVH---GVTKFSDLTPSEFRRQFLGLN----RRLRLPADAQKAP--ILPTN-DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 645
            FK +  K Y  + E  +R ++F  N  + AK  Q      V     V K++DL   EFR+   G N    ++LR   ++ K    I P +  LP   DWR  GAVT VKDQG CGSCW+FS+TGALEG HF  +G LVSLSEQ LVDC  +         ++GCNGGLM++AF YI
Sbjct:   62 FKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYG-------NNGCNGGLMDNAFRYI 230          

HSP 2 Score: 24.2534 bits (51), Expect = 7.794e-30
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTD 700
            GG++ EK YPY   D
Sbjct:  234 GGIDTEKSYPYEAID 248          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.015e-29
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  118 HLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRR--AKRRQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +L  A  +F  F   ++K Y +  E + R+ +FK NL    AK     D PTA + + KFSDL+ SE   +F GL+   R+ ++  K  IL  P +  P  FDWR+   VT +K+QGACG+CW+F+   ++E    +    L+ LSEQQL+DCD         S D GCNGGL+++AFE I+
Sbjct:   48 NLQRAPDYFESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKFTGLSIPERV-SNFCKTIILNQPPDKGPLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD---------SVDMGCNGGLLHTAFEEIM 219          

HSP 2 Score: 26.1794 bits (56), Expect = 1.015e-29
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  650 RLGGVEREKDYPYTG 694
            R+GGV+ E DYP+ G
Sbjct:  220 RMGGVQTELDYPFVG 234          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.720e-29
Identity = 74/173 (42.77%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  142 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKR-RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL---PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            F+ +  KF++ Y++ E  + R+ +FK+N+          D   V G+  F+D+T  E+R+ +LG               +L   DL   P   DWR   AVT +KDQG CGSCWSFS TG+ EGAH L T +LVSLSEQ LVDC     PEE    + GC+GGLMN+AF+YI+
Sbjct:   36 FTEWTLKFNRQYSSSEFSN-RYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS---GPEE----NFGCDGGLMNNAFDYII 200          

HSP 2 Score: 21.9422 bits (45), Expect = 1.720e-29
Identity = 7/15 (46.67%), Postives = 9/15 (60.00%), Query Frame = 2
Query:  659 GVEREKDYPYTGTDG 703
            G++ E  YPYT   G
Sbjct:  204 GIDTESSYPYTAETG 218          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.724e-29
Identity = 68/178 (38.20%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  121 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 639
            LL A ++F  F  KF+K Y+++ E  +RF++F+ NL     +   D TA + + KFSDL+  E   ++ GL+    LP   Q   +  IL  P +  P +FDWR    VT VK+QG CG+CW+F+  G+LE    +    L++LSEQQ +DCD           ++GC+GGL+++AFE
Sbjct:   21 LLKAPNYFEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLS----LPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDR---------VNAGCDGGLLHTAFE 185          

HSP 2 Score: 25.7942 bits (55), Expect = 1.724e-29
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  653 LGGVEREKDYPYTGTDG 703
            +GGV+ E DYPY   +G
Sbjct:  190 MGGVQMESDYPYETANG 206          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.244e-29
Identity = 74/181 (40.88%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  115 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 645
            D   NA+ H   +KS   + Y T EE ++R  V++ N+R  +          HG T     F D+T  EFR+   G   +        + P++    +P   DWR+ G VT VK+QG CGSCW+FSA+G LEG  FL TG+L+SLSEQ LVDC H+         + GCNGGLM+ AF+YI
Sbjct:   22 DQTFNAQWH--QWKSTHRRLYGTNEE-EWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGRLFQEPLML--QIPKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHD-------QGNQGCNGGLMDFAFQYI 190          

HSP 2 Score: 24.2534 bits (51), Expect = 2.244e-29
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTDG 703
            GG++ E+ YPY   DG
Sbjct:  194 GGLDSEESYPYEAKDG 209          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.245e-29
Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  190 EHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLN----RRLRLPADAQK--APILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            + D RF +FK NLR        +  A +  G+T F++LT  E+R  +LG      RR+    +     +  +  +++P   DWR  GAV  +KDQG CGSCW+FS   A+EG + + TGELVSLSEQ+LVDCD         S + GCNGGLM+ AF++I+
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIM 176          

HSP 2 Score: 29.6462 bits (65), Expect = 2.245e-29
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTDG 703
            GG+  EKDYPY GT+G
Sbjct:  179 GGLNTEKDYPYHGTNG 194          
The following BLAST results are available for this feature:
BLAST of CF417504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP_TRYCR2.816e-3042.94Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CYSP5_DICDI2.816e-3045.00Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
ALEU_ARATH5.989e-3041.15Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
XCP2_ARATH5.990e-3039.13Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CATL_DROME7.794e-3044.32Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATV_NPVLD1.015e-2939.56Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CYSP2_DICDI1.720e-2942.77Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATV_NPVOP1.724e-2938.20Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATL1_RAT2.244e-2940.88Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CYSP4_BRANA2.245e-2941.61Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-434 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417504 ID=CF417504; Name=CF417504; organism=Citrus sinensis; type=EST; length=704bp
CTCTCCTCTCTCCTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGT
AGCTGTCAGCGGCGACGATGCTATGATCAGACAGGTCGTGCCATCAGACG
GCGAACAATCCGAAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTC
TTCAAGTCCAAATTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTA
CCGATTCCGCGTGTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGC
TCCTGGACCCCACTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACG
CCGTCTGAATTCCGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCT
ACCAGCTGACGCTCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTA
CTGACTTTGACTGGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAG
GGCGCATGTGGATCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGG
AGCGCACTTCTTATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGC
TTGTGGACTGTGATCACGAGTGTGATCCAGAGGAATCTGGTTCATGTGAC
TCTGGGTGCAATGGTGGGCTAATGAACTCTGCCTTTGAGTACATACTCNA
GGCTNGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGGGACCGAC
GGTG
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