CF417504

Overview
NameCF417504
Unique NameCF417504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417504_ssr10 microsatellite CF417504_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:129..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 58/177 (32.77%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  121 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            LL A  +F  F + ++K Y    E + RF +F+  L     +  L+ +AV+ + KF+DL+ +E   ++ GLN  ++     +   I  P    P +FDWR    VT +K+Q ACG+CW+F+   ++E  + +     + LSEQQ++DCD+          D GC+GGL+++AFE ++
Sbjct:   24 LLKAGDYFETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKGPLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCDY---------VDMGCDGGLLHTAFEQMI 191          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  133 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +HH++L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P   Q+     +N    LP   DWR+ G VT VK QG+CG+CW+FSA GALE    L TG+LVSLS Q LVDC      E+ G  + GCNGG M  AF+YI+
Sbjct:   25 DHHWNLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPNQWQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS-----EKYG--NKGCNGGFMTEAFQYII 192          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  133 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +HH+ L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+   +       P   LP   DWR+ G VT VK QGACGSCW+FSA GALE    L TG+LVSLS Q LVDC        +   + GCNGG M  AF+YI+
Sbjct:   25 DHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEV----ISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYII 193          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  127 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 645
            N + H+  +K+   + Y   EE ++R  V++ N +             HG    +  F D+T  EFR+   G   +          P+L   D+P   DW   G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGGLM++AF+YI
Sbjct:   24 NLDAHWHQWKATHRRLYGMNEE-EWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLV--DVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-------AQGNQGCNGGLMDNAFQYI 190          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 70/172 (40.70%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  139 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            HF  + SK  KTY+T+E H +R + F +N R+       + T    + +FSD++ +E + ++L    +      A K+  L  T   P   DWR  G  V+ VK+QGACGSCW+FS TGALE A  ++TG+++SL+EQQLVDC  + +       + GC GGL + AFEYIL
Sbjct:   34 HFKSWMSKHRKTYSTEEYH-HRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWSEPQ---NCSATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFN-------NHGCQGGLPSQAFEYIL 194          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 60/175 (34.29%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  142 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH-GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            F  + +++ + Y   +E   RF++FK N++  +     +  +   G+ +F+D+T SEF  Q+ G++    LP + ++ P++  +D+     P   DWRD+GAV  VK+Q  CGSCWSF+A   +EG + + TG LVSLSEQ+++DC          +   GC GG +N A+++I+
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVS----LPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFII 197          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.039e-25
Identity = 62/177 (35.03%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  121 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +L A ++F  F  +++K Y ++ E   R+++F+ NL     +   D TAV+ + KFSDL+  E   ++ GL+  L      +   +  P    P +FDWR    +T VK+QG CG+CW+F+   +LE    ++   L++LSEQQ++DCD         S D GC GGL+++AFE I+
Sbjct:   21 ILKAPNYFEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRND-TAVYKINKFSDLSKDETIAKYTGLSLPLHTQNFCEVVVLDRPPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCD---------SVDVGCEGGLLHTAFEAII 187          

HSP 2 Score: 23.8682 bits (50), Expect = 1.039e-25
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  653 LGGVEREKDYPYTGTD 700
            +GGV+ E DYPY  ++
Sbjct:  189 MGGVQIENDYPYESSN 204          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.352e-25
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  127 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 648
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD           D GC+GGL+++A+E I+
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIM 201          

HSP 2 Score: 22.7126 bits (47), Expect = 1.352e-25
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  650 RLGGVEREKDYPY 688
            ++GGVE+E DY Y
Sbjct:  202 KMGGVEQEFDYSY 214          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25
Identity = 70/160 (43.75%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  187 EEHDYRFRVFKANLRRAKR-RQLLDPTAVHGVTKFSDLTPSEFRRQFLGL---NRRLRLPADAQKAPILPTN--DLPT-DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 645
            +E + RF VFK N++      Q  D      + KF D+T  EFR ++ G    + R +          +  N   LP    DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TGELVSLSEQ+LVDCD         S + GCNGGLM+ AFE+I
Sbjct:   54 DEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLMDYAFEFI 205          
BLAST of CF417504 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.290e-25
Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 1
Query:  127 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGL-NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 645
            N +  +  +K+   + Y   EE  +R  V++ N++  +          HG    +  F D+T  EFR+   G  N++ +      ++ +L   ++P   DWR+ G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGGLM++AF+Y+
Sbjct:   24 NLDADWYKWKATHGRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVL---EVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGLMDNAFQYV 190          

HSP 2 Score: 22.7126 bits (47), Expect = 2.290e-25
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  656 GGVEREKDYPYTGTD 700
            GG++ E+ YPY G +
Sbjct:  194 GGLDTEESYPYLGRE 208          
The following BLAST results are available for this feature:
BLAST of CF417504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CATV_NPVBS9.373e-2632.77Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATS_SAIBB9.373e-2639.11Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_BOVIN9.373e-2638.55Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATL2_BOVIN9.373e-2639.55Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATH_HUMAN9.373e-2640.70Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
BROM1_ANACO9.373e-2634.29Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CATV_NPVEP1.039e-2535.03Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATV_NPVSE1.352e-2533.51Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CYSP_HEMSP1.599e-2543.75Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATL1_PIG2.290e-2538.20Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-434 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417504 ID=CF417504; Name=CF417504; organism=Citrus sinensis; type=EST; length=704bp
CTCTCCTCTCTCCTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGT
AGCTGTCAGCGGCGACGATGCTATGATCAGACAGGTCGTGCCATCAGACG
GCGAACAATCCGAAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTC
TTCAAGTCCAAATTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTA
CCGATTCCGCGTGTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGC
TCCTGGACCCCACTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACG
CCGTCTGAATTCCGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCT
ACCAGCTGACGCTCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTA
CTGACTTTGACTGGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAG
GGCGCATGTGGATCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGG
AGCGCACTTCTTATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGC
TTGTGGACTGTGATCACGAGTGTGATCCAGAGGAATCTGGTTCATGTGAC
TCTGGGTGCAATGGTGGGCTAATGAACTCTGCCTTTGAGTACATACTCNA
GGCTNGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGGGACCGAC
GGTG
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