CF417507 | Citrus Genome Database

Overview


Name	CF417507
Unique Name	CF417507
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	687

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1260	contig	Csv1_Contig1260:464..1147.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.025e-83
Identity = 129/178 (72.47%), Postives = 146/178 (82.02%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+   +FAG+ A++ S       G    G++TMR+T          S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

HSP 2 Score: 69.707 bits (169), Expect = 1.025e-83
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.336e-83
Identity = 134/184 (72.83%), Postives = 150/184 (81.52%), Query Frame = 1

Query:   10 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR 188

HSP 2 Score: 71.633 bits (174), Expect = 1.336e-83
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG FDPLGLADDPD FAELKVKE+KNGRLAMFSMF
Sbjct:  203 PGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 238

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.337e-83
Identity = 132/178 (74.16%), Postives = 147/178 (82.58%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+   +FAG+ A++ S       G    G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

HSP 2 Score: 71.2478 bits (173), Expect = 1.337e-83
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.337e-83
Identity = 122/149 (81.88%), Postives = 132/149 (88.59%), Query Frame = 1

Query:   94 VADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 165

HSP 2 Score: 72.0182 bits (175), Expect = 1.337e-83
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:  180 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 215

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.744e-83
Identity = 122/148 (82.43%), Postives = 135/148 (91.22%), Query Frame = 1

Query:  106 GRITMRRTVKSTPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 177

HSP 2 Score: 71.2478 bits (173), Expect = 1.744e-83
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.744e-83
Identity = 131/178 (73.60%), Postives = 148/178 (83.15%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-83
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  191 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 226

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.744e-83
Identity = 131/178 (73.60%), Postives = 148/178 (83.15%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-83
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  191 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 226

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.744e-83
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 1

Query:  106 GRITMRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYR
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR 173

HSP 2 Score: 72.0182 bits (175), Expect = 1.744e-83
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:  188 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 2.275e-83
Identity = 130/178 (73.03%), Postives = 146/178 (82.02%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+   +FAG  A++ S       G    G+  MR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR 177

HSP 2 Score: 71.2478 bits (173), Expect = 2.275e-83
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.967e-83
Identity = 129/178 (72.47%), Postives = 149/178 (83.71%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTP---QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+  S+FAG+ A++ S       G    G++TMR+T  K+ P    S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

HSP 2 Score: 69.707 bits (169), Expect = 2.967e-83
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227

The following BLAST results are available for this feature:

BLAST of CF417507 vs. ExPASy Swiss-Prot

BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
CB24_TOBAC	1.025e-83	72.47	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB2A_PINSY	1.336e-83	72.83	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB25_PETSP	1.337e-83	74.16	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_CUCSA	1.337e-83	81.88	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2A_SPIOL	1.744e-83	82.43	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB25_NICPL	1.744e-83	73.60	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB21_TOBAC	1.744e-83	73.60	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB23_SOYBN	1.744e-83	84.83	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB27_TOBAC	2.275e-83	73.03	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB23_NICPL	2.967e-83	72.47	Chlorophyll a-b binding protein C, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-437 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bp
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAANTNGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTNACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAG
CTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTG