CF417507 | Citrus Genome Database

Overview


Name	CF417507
Unique Name	CF417507
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	687

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1260	contig	Csv1_Contig1260:464..1147.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.411e-22
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1

Query:  436 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 33

HSP 2 Score: 62.003 bits (149), Expect = 8.411e-22
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPL    DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:   49 PGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMF 84

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.107e-21
Identity = 43/117 (36.75%), Postives = 57/117 (48.72%), Query Frame = 1

Query:  205 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRXXWRSS 552
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R   + S
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDS 163

HSP 2 Score: 55.4546 bits (132), Expect = 5.107e-21
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 683
            PGGAFDPLG + DP +F ELKVKE+KNGRLA+ ++
Sbjct:  169 PGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAI 203

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.623e-21
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227

HSP 2 Score: 51.6026 bits (122), Expect = 8.623e-21
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1

Query:  457 NLIHAQSILAIWACQVVLMGFVEGYR 534
            +L+HAQSILAIWACQVVLMG VEGYR
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYR 177

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.623e-21
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227

HSP 2 Score: 51.6026 bits (122), Expect = 8.623e-21
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1

Query:  457 NLIHAQSILAIWACQVVLMGFVEGYR 534
            +L+HAQSILAIWACQVVLMG VEGYR
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYR 177

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.626e-21
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225

HSP 2 Score: 51.6026 bits (122), Expect = 8.626e-21
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1

Query:  457 NLIHAQSILAIWACQVVLMGFVEGYR 534
            +L+HAQSILAIWACQVVLMG VEGYR
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYR 175

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.626e-21
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225

HSP 2 Score: 51.6026 bits (122), Expect = 8.626e-21
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1

Query:  457 NLIHAQSILAIWACQVVLMGFVEGYR 534
            +L+HAQSILAIWACQVVLMG VEGYR
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYR 175

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.131e-21
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:   41 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 76

HSP 2 Score: 51.6026 bits (122), Expect = 9.131e-21
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1

Query:  457 NLIHAQSILAIWACQVVLMGFVEGYR 534
            +L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYR 26

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.463e-20
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 1

Query:  106 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR 156

HSP 2 Score: 55.4546 bits (132), Expect = 1.463e-20
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3

Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 680
            PGGAFDPLG + DP +F ELK+KE+KNGRLAM +
Sbjct:  168 PGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLA 201

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.210e-20
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 1

Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168

HSP 2 Score: 37.7354 bits (86), Expect = 3.210e-20
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  579 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 683
            PGG  FDPLG     P +  EL+ KE+KNGRLAM ++
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 233

[Close]

BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.176e-20
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1

Query:  163 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168

HSP 2 Score: 37.7354 bits (86), Expect = 4.176e-20
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  579 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 683
            PGG  FDPLG     P +  EL+ KE+KNGRLAM ++
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 233

The following BLAST results are available for this feature:

BLAST of CF417507 vs. ExPASy Swiss-Prot

BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
CB21_RAPSA	8.411e-22	84.85	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB11_SOLLC	5.107e-21	36.75	Chlorophyll a-b binding protein 6A, chloroplastic ...	[more]
CB2F_SOLLC	8.623e-21	86.11	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	8.623e-21	86.11	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2C_SOLLC	8.626e-21	86.11	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	8.626e-21	86.11	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2D_SOLLC	9.131e-21	86.11	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB121_HORVU	1.463e-20	32.64	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
CB12_SOLLC	3.210e-20	30.39	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB12_PETHY	4.176e-20	37.10	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-437 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bp
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAANTNGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTNACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAG
CTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTG