CF417507
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-18 Identity = 69/189 (36.51%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 10 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MAT A+ S+ FA + A+RQS VG + G + +TP G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L K G+ E WF+ G I G +Y + ++ ++ LMGF E R Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 172 HSP 2 Score: 41.2022 bits (95), Expect = 6.146e-18 Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3 Query: 579 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSM 683 PGG F +PLG D ELK+KE+KNGRLAM ++ Sbjct: 203 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 3.293e-16 Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 3 Query: 558 KDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 683 +DL PGG FDPLGLADDPD F ELKVKE+KNGRLAM M Sbjct: 40 EDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGM 81 HSP 2 Score: 39.2762 bits (90), Expect = 3.293e-16 Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1 Query: 460 LIHAQSILAIWACQVVLMGFVEGYR 534 LIHA+S+LAI A QV+LMG VEGYR Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYR 29
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 5.318e-16 Identity = 66/191 (34.55%), Postives = 93/191 (48.69%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MAT A+ S+ ++ S E R++ G RI+ T K STP + G +R + S+Q+ SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PEIL K G+ E WF+ G I G +Y + ++ ++ LMGF E R Sbjct: 1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 170 HSP 2 Score: 41.5874 bits (96), Expect = 5.318e-16 Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3 Query: 579 PGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSM 683 PGG F+PLG D ELK+KE+KNGRLAM ++ Sbjct: 201 PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAI 236
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 7.727e-14 Identity = 46/148 (31.08%), Postives = 63/148 (42.57%), Query Frame = 1 Query: 91 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 GV+ R + + P+ W P G + P +L G PGD+G+D GL DP RE E+IH RWAML LG G + WF+AGA +P + S + Q++LMG+VE R Sbjct: 39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKR 163 HSP 2 Score: 32.7278 bits (73), Expect = 7.727e-14 Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 3 Query: 579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683 PGG F DPL LA D D+ LK+ E+K+ RLAM +M Sbjct: 198 PGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.005e-13 Identity = 40/110 (36.36%), Postives = 50/110 (45.45%), Query Frame = 1 Query: 205 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 P +L G PGDYG+D GL DP RE E+IH RWAM LG G + WF+AGA +P I S + Q++LMG+VE R Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKR 158 HSP 2 Score: 32.3426 bits (72), Expect = 1.005e-13 Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 3 Query: 579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683 PGG F DPL LA D ++ LKV E+K+ RLAM +M Sbjct: 193 PGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAM 237
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 8.144e-13 Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 1 Query: 205 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 P +L G PGD+G+D GL DP RE E+IH RWAM LG G + WF+AGA +P I S ++ Q++LMG+VE R Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 158 HSP 2 Score: 31.187 bits (69), Expect = 8.144e-13 Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 3 Query: 579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683 PGG F DPL LA D ++ LK+ E+K+ RLAM +M Sbjct: 193 PGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 237
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 199 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 420 + P+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L G+ WF+AG + Sbjct: 195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 45.0542 bits (105), Expect = 3.147e-11 Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 3 Query: 579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAM 674 PGG FDPLGLA DP++ LK+ E+K+ RLAM Sbjct: 219 PGGYFDPLGLAADPEKLDTLKLAEIKHSRLAM 250 HSP 2 Score: 43.8986 bits (102), Expect = 3.147e-11 Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 1 Query: 292 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 RE E+IH RWAMLG LG + E L+ G+ W AG EG YLG P ++ IW +V+++G++E R Sbjct: 138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQR 207 The following BLAST results are available for this feature:
BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bpback to top |