CF417507

Overview
NameCF417507
Unique NameCF417507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:464..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-18
Identity = 69/189 (36.51%), Postives = 93/189 (49.21%), Query Frame = 1
Query:   10 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MAT A+  S+   FA + A+RQS         VG +  G +       +TP     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 172          

HSP 2 Score: 41.2022 bits (95), Expect = 6.146e-18
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  579 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSM 683
            PGG F +PLG   D     ELK+KE+KNGRLAM ++
Sbjct:  203 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.293e-16
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  558 KDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 683
            +DL    PGG FDPLGLADDPD F ELKVKE+KNGRLAM  M
Sbjct:   40 EDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGM 81          

HSP 2 Score: 39.2762 bits (90), Expect = 3.293e-16
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:  460 LIHAQSILAIWACQVVLMGFVEGYR 534
            LIHA+S+LAI A QV+LMG VEGYR
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYR 29          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.318e-16
Identity = 66/191 (34.55%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MAT A+  S+     ++  S E  R++    G RI+   T K        STP  +  G +R  +    S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:    1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 170          

HSP 2 Score: 41.5874 bits (96), Expect = 5.318e-16
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  579 PGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSM 683
            PGG  F+PLG   D     ELK+KE+KNGRLAM ++
Sbjct:  201 PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAI 236          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.727e-14
Identity = 46/148 (31.08%), Postives = 63/148 (42.57%), Query Frame = 1
Query:   91 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            GV+   R  +     + P+  W     P   G  +   P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R
Sbjct:   39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKR 163          

HSP 2 Score: 32.7278 bits (73), Expect = 7.727e-14
Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683
            PGG F DPL LA          D D+   LK+ E+K+ RLAM +M
Sbjct:  198 PGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.005e-13
Identity = 40/110 (36.36%), Postives = 50/110 (45.45%), Query Frame = 1
Query:  205 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKR 158          

HSP 2 Score: 32.3426 bits (72), Expect = 1.005e-13
Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683
            PGG F DPL LA          D ++   LKV E+K+ RLAM +M
Sbjct:  193 PGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAM 237          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 8.144e-13
Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  205 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG+VE  R
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 158          

HSP 2 Score: 31.187 bits (69), Expect = 8.144e-13
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 3
Query:  579 PGGAF-DPLGLAD---------DPDQFAELKVKELKNGRLAMFSM 683
            PGG F DPL LA          D ++   LK+ E+K+ RLAM +M
Sbjct:  193 PGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 237          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  199 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 420
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 3.147e-11
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAM 674
            PGG FDPLGLA DP++   LK+ E+K+ RLAM
Sbjct:  219 PGGYFDPLGLAADPEKLDTLKLAEIKHSRLAM 250          

HSP 2 Score: 43.8986 bits (102), Expect = 3.147e-11
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  292 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            RE E+IH RWAMLG LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G++E  R
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQR 207          
The following BLAST results are available for this feature:
BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_PEA6.146e-1836.51Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_EUGGR3.293e-1673.81Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC5.318e-1634.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4_SPIOL7.727e-1431.08Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.005e-1336.36Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC8.144e-1335.45Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
LH18_EUGGR1.260e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4C_ARATH3.147e-1162.50Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-437 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bp
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAANTNGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTNACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAG
CTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTG
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