CF417508

Overview
NameCF417508
Unique NameCF417508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_MOUSE (Histidine ammonia-lyase OS=Mus musculus GN=Hal PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 62/212 (29.25%), Postives = 95/212 (44.81%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV-EAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT +   L    L  A+ +   +++++A+  E ++G  +  D   H ++ H GQIE A     +LD   +  E A+     D +Q    D Y LR  PQ  G   + I      I  E+NS  DNP++  SR + + GGNF G     ++D   + +  +  +   +   L N   S  LP+ L   GG    L+ GF  A    AA  SE
Sbjct:  307 NGTQMITSLGCEALERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQ----DAYTLRCCPQVHGVVNDTIAFVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSE-LPAFLVAEGG----LNSGFMIAHCTAAALVSE 509          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_MACCJ (Histidine ammonia-lyase OS=Macrococcus caseolyticus (strain JCSC5402) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 60/211 (28.44%), Postives = 97/211 (45.97%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKAL--HGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT        I   EA  L   +E ++A+  +A+ G  +  D   H +++   Q+  A  M   L+GSS      +           QD Y+LR  PQ  G   +V+    + +E E+N+ NDNPLI    ++ L   GGNF G P+  ++D  ++ ++ +  +   +   LVN   +  LP+ LS   +P L  G    + A A+  SE
Sbjct:  195 NGTQAMTSQGVISYIEAEQLAYDAEWIAALTHQALNGIVDAYDAHVHIVRNSKEQLSVANRMLDWLEGSSLTTRQGELRV--------QDAYSLRCIPQIHGASFQVLNYVKEKLECEMNAANDNPLIFDKDDETLVISGGNFHGQPVAFALDFLKIGVSELSNVSERRIERLVNPQLNGDLPAFLS--PHPGLQSGAMIMQYAAASLVSE 395          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_BOVIN (Histidine ammonia-lyase OS=Bos taurus GN=HAL PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 61/212 (28.77%), Postives = 95/212 (44.81%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV-EAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT +   L    +  A+ +   +++++A+  E ++G  +  D   H ++ H GQ+E A     +LD   +  E A+     D +Q    D Y LR  PQ  G   + I      I  EINS  DNP++  SR + + GGNF G     ++D   + +  +  +   +   L N   S  LP+ L   GG    L+ GF  A    AA  SE
Sbjct:  307 NGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQ----DAYTLRCCPQVHGVVNDTIAFVKNIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELASISERRIERLCNPSLSE-LPAFLVAEGG----LNSGFMIAHCTAAALVSE 509          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_DEIDV (Histidine ammonia-lyase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 59/211 (27.96%), Postives = 97/211 (45.97%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLS--GGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT +   L ++ L +A  L   + + +A+  EA+ G           L+ HPG +  A  +   L  S    +     ++       QD Y+LR  PQ  G   + +  + + +  E  SV DNPLI     + + GGNF G P+ ++ D  ++A+A +  +   +  +L+N   S+ LP  L+  GG    L+ GF  A+   AA  SE
Sbjct:  192 NGTQLMGSLLALALHDAWALLGTANLAAAMTVEALSGSHRPFGAEVVGLRPHPGAVHTAEELRRFLRESQIAPSHASCGKV-------QDAYSLRAVPQVHGATHDALSQAARVLAVEFASVTDNPLIFPDTGEVVSGGNFHGQPLALTADALKVAVAELASISERRCEQLLNPALSS-LPGFLAPEGG----LNSGFMIAQYTAAALVSE 390          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_HUMAN (Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 62/212 (29.25%), Postives = 95/212 (44.81%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV-EAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT +   L    +  A+ +   +++++A+  E ++G  +  D   H L+ H GQIE A     +LD   +  E A+     D +Q    D Y LR  PQ  G   + I      I  E+NS  DNP++  +R + + GGNF G     ++D   + I  +  +   +   L N   S  LP+ L   GG    L+ GF  A    AA  SE
Sbjct:  307 NGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHALRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQ----DAYTLRCCPQVHGVVNDTIAFVKNIITTELNSATDNPMVFANRGETVSGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSE-LPAFLVAEGG----LNSGFMIAHCTAAALVSE 509          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_RAT (Histidine ammonia-lyase OS=Rattus norvegicus GN=Hal PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 61/212 (28.77%), Postives = 95/212 (44.81%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV-EAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT +   L    +  A+ +   +++++A+  E ++G  +  D   H ++ H GQIE A     +LD   +  E A+     D +Q    D Y LR  PQ  G   + I      I  E+NS  DNP++  SR + + GGNF G     ++D   + +  +  +   +   L N   S  LP+ L   GG    L+ GF  A    AA  SE
Sbjct:  307 NGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQ----DAYTLRCCPQVHGVVNDTIAFVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSE-LPAFLVAEGG----LNSGFMIAHCTAAALVSE 509          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA6 (Histidine ammonia-lyase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hutH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13
Identity = 60/211 (28.44%), Postives = 95/211 (45.02%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LF A      S  + A+  +A  G     +   H ++ H  QI+ A     +L  S   ++     ++       QD Y+LR  PQ +G   + +R + + +  E N V+DNP++    +  L GGNF    + ++ D   +A+A IG L   + + L++   S GLP  L  +GG N     GF  A++  AA  SE
Sbjct:  197 NGTQASTAFALQGLFYAENALTSSIAIGALSVDAALGSRVPFNERIHIVRGHQAQIDVATGFRTLLQESEIGKSHGGCEKV-------QDPYSLRCQPQVMGACLQQMRFAKQILVTEANGVSDNPIVFSESDDVLSGGNFHAETVAMAADMLAIALAEIGALSERRMALLIDSSLS-GLPPFLVDNGGVNS----GFMIAQVTSAALASE 395          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_STRGR (Histidine ammonia-lyase OS=Streptomyces griseus GN=hutH PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 56/211 (26.54%), Postives = 96/211 (45.50%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQ 634
            NGT    G+  + L +   L   +++ +A+  EA+ G  +      H ++ HPGQ  +A  M  +L GS         H  D   +  QD Y++R +PQ  G   + +  +     RE+ S  DNP++ +   +    GNF G P+   +D   +  A +G +   +   L++   S+GLP  L+      +D G   A+   AA  SE++
Sbjct:  197 NGTDGMLGMLVMALADLRNLYTSADITAALSLEALLGTDKVLAPELHAIRPHPGQGVSADNMSRVLAGSGLTG-----HHQDDAPRV-QDAYSVRCAPQVNGAGRDTLDHAALVAGRELASSVDNPVV-LPDGRVESNGNFHGAPVAYVLDFLAIVAADLGSICERRTDRLLDKNRSHGLPPFLADDAG--VDSGLMIAQYTQAALVSEMK 398          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_THEAC (Probable histidine ammonia-lyase OS=Thermoplasma acidophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFA-EAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 625
            NGT   +G+ SI + +A+ + + + + SA+ + EA+ G  +         + H GQ+         L GS  V+ A             QD Y LR  PQ  G  A+VI      +  EINS  DNPL   +  + + GGNF G P+ ++ D   +A+  +G ++  + + LV D   +GLP  L+      L+ G+   +   AA C+
Sbjct:  194 NGTSFMSGILSIAVMDAHDI-LENAIRSALLSFEALGGTSKAFTPWILGARPHLGQVAIGNRFREYLTGSDIVKRADSVKV--------QDAYTLRCIPQVYGSVADVIDYVENVLSVEINSATDNPLF--NGEEVVSGGNFHGEPVALAADFLAIALTDLGNMVERRIARLV-DTNLSGLPPFLTPDSG--LNSGYMIPQYTAAALCN 388          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: PALY_AGABI (Phenylalanine ammonia-lyase (Fragment) OS=Agaricus bisporus GN=palA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  410 HGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQF 637
            HGGNFQ   +  +M+ +RLA+  IGK++FAQ +EL+N   + GLP +L+   +P L+Y  KG +IA AAY +EL +
Sbjct:    7 HGGNFQAMAVTNAMEKTRLALHHIGKIIFAQSTELINPATNRGLPPSLAAS-DPSLNYHVKGVDIATAAYAAELGY 81          
The following BLAST results are available for this feature:
BLAST of CF417508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_MOUSE1.987e-1329.25Histidine ammonia-lyase OS=Mus musculus GN=Hal PE=... [more]
HUTH_MACCJ1.987e-1328.44Histidine ammonia-lyase OS=Macrococcus caseolyticu... [more]
HUTH_BOVIN1.987e-1328.77Histidine ammonia-lyase OS=Bos taurus GN=HAL PE=2 ... [more]
HUTH_DEIDV2.595e-1327.96Histidine ammonia-lyase OS=Deinococcus deserti (st... [more]
HUTH_HUMAN3.390e-1329.25Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=... [more]
HUTH_RAT4.427e-1328.77Histidine ammonia-lyase OS=Rattus norvegicus GN=Ha... [more]
HUTH_PSEA69.863e-1328.44Histidine ammonia-lyase OS=Pseudoalteromonas atlan... [more]
HUTH_STRGR3.748e-1226.54Histidine ammonia-lyase OS=Streptomyces griseus GN... [more]
HUTH_THEAC4.895e-1228.71Probable histidine ammonia-lyase OS=Thermoplasma a... [more]
PALY_AGABI6.393e-1246.05Phenylalanine ammonia-lyase (Fragment) OS=Agaricus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-438 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417508 ID=CF417508; Name=CF417508; organism=Citrus sinensis; type=EST; length=639bp
TAACGGAACAGGAGTGGGTGCTGGCTTGGCTTCTATTGTTCTTTTTGAGG
CTAATATTTTAACTGTTTTGTCCGAAGTTTTGTCAGCAATTTTTGCGGAA
GCTATGCAAGGAAAGCCTGAGTTTACGGATCATTTGACTCACAAGCTGAA
GCATCACCCTGGACAAATTGAAGCTGCAGCTATAATGGAACATATCTTGG
ATGGTAGCTCTTATGTTGAGGCAGCACAAAAATTCCATGAAATTGACCCT
TTACAGAAGCCTAAGCAAGATCGGTATGCTCTTCGAACTTCACCACAATG
GTTAGGCCCTCAAGCTGAAGTGATTCGAGCATCGACAAAGTCTATTGAGA
GGGAGATTAACTCTGTGAATGATAATCCGTTGATTGATGTTTCAAGGAAC
AAGGCATTACACGGTGGCAATTTCCAGGGCACTCCAATTGGTGTCTCTAT
GGATAATTCAAGATTGGCAATTGCTTCGATTGGGAAACTCATGTTTGCTC
AATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAAT
CTGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGA
AATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCT
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