CF417508

Overview
NameCF417508
Unique NameCF417508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.911e-32
Identity = 86/217 (39.63%), Postives = 123/217 (56.68%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKP-----KQDRYALRTSPQWLGPQ-AEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSEL 631
            NGT V A +A++ L +A++L++L++ L+A+  EAM G    F   L    + HP QIE A  +  +L+GS Y       HE +   K      +QDRY LR SPQWLGP  +++I A          S  DNPLID+      HGG F  + +G +M+ +RLA+A +GK+ F Q +E++N   +  LPS L+   +P L Y  KG +IA AAY SEL
Sbjct:  272 NGTAVSASMATLALTDAHVLSLLAQALTALTVEAMVGHAGSFHPFLHDVTRPHPTQIEVARNIRTLLEGSKYAV----HHETEVKVKDDEGILRQDRYPLRCSPQWLGPLVSDMIHAHAVLSLEAGQSTTDNPLIDLENKMTHHGGAFMASSVGNTMEKTRLAVALMGKVSFTQLTEMLNAGMNRALPSCLA-AEDPSLSYHCKGLDIAAAAYTSEL 483          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_METS4 (Histidine ammonia-lyase OS=Methylobacterium sp. (strain 4-46) GN=hutH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23
Identity = 74/209 (35.41%), Postives = 105/209 (50.24%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT     LA   LF A  L     V  A+  +A +G     D   H L+ H GQI+AA  +  +L GS    A +  H +    +  QD Y LR  PQ +G   +++R +  ++E E N V+DNPL+     +AL GGNF   P+  + D   LA+  IG L   + S LV+   S+GLP+ L+G   P L+ GF   ++  AA  SE
Sbjct:  196 NGTQFSTALALAGLFGAEDLLRAGLVTGALSVDAARGSDTPFDPRIHALRRHRGQIDAADALRRLLAGS----AIRASHLVG--DERVQDPYCLRCQPQVMGAALDLLRQAGATLETEANGVSDNPLVFPETGEALSGGNFHAEPVAFAADMIALALCEIGSLAERRISLLVDPALSSGLPAFLTG--RPGLNSGFMIPQVTAAALVSE 396          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_MARMM (Histidine ammonia-lyase OS=Maricaulis maris (strain MCS10) GN=hutH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23
Identity = 71/209 (33.97%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT     LA   LFE       + V  A+  +A +G     D   H L+ HPGQI+ AA +  +LDGS  + + +   +I       QD Y LR  PQ +G   +++R +   +ERE N+V DNPLI    ++A+ GGNF   P+  + D   +A   IG +   + + L+ D   +GLP+ L+   NP ++ GF  A +  AA  SE
Sbjct:  195 NGTQTSTALALAGLFEVEAGFQAALVSGALSVDAAKGSVAPFDPRIHSLRGHPGQIDVAAALRGLLDGSGILSSHEGCEKI-------QDPYCLRCQPQVMGAVLDLLRQAGAVLEREANAVTDNPLIFTDTDEAISGGNFHAEPVAFAADQIAMAACEIGSICERRIA-LLTDPAVSGLPAFLT--PNPGINSGFMIAHVTAAALVSE 393          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_ENT38 (Histidine ammonia-lyase OS=Enterobacter sp. (strain 638) GN=hutH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 74/209 (35.41%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H ++   GQI+AAA+  H+L  +S  E A   H  D +Q P    Y+LR  PQ +G     +R + + +  E N+V+DNPL+   +N+ + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   RN  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAEDLFASAVVCGALTTEAVLGSRSPFDARIHAVRGQRGQIDAAAMYRHVLTDTS--EIADSHHNCDKVQDP----YSLRCQPQVMGACLTQLRHAAEVLLVESNAVSDNPLVFAEQNEVVSGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--RNGGVNSGFMIAQVTAAALASE 395          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP7 (Histidine ammonia-lyase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hutH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.995e-22
Identity = 72/209 (34.45%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA  G     D   H+++   GQI+AAA+  H+L   S +  +Q  H    +Q P    Y+LR  PQ +G     IR + + +  E N+V+DNPL+  + N  + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  197 NGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAI--SQSHHNCSKVQDP----YSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIA-LMMDSHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 396          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_TREDE (Histidine ammonia-lyase OS=Treponema denticola GN=hutH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.218e-22
Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNL--SGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT V +G+ ++ L +A  L   + + +++  EA +G     D   HK + H GQI+ AA +  +L GSS          I+  +   QD Y LR  PQ  G  A+ I    K +E EIN+V DNPL+    +  + GGNF G PI ++MD   +A++ +  +   +   LVN   + GLP+ L  +GG N     GF   +   A+  SE
Sbjct:  198 NGTPVMSGIGALALHDAEQLLKAANMGASLVFEAFRGITAALDPRIHKSRPHKGQIDTAAFILKMLKGSS---------SINTRENDVQDPYTLRCVPQVHGASADAIAYVRKVLEIEINAVTDNPLVFPDNHDVISGGNFHGQPIAITMDFLGIAVSELANISERRIERLVNPQLNGGLPAFLIENGGVNS----GFMIPQYTAASLVSE 395          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_RHILO (Histidine ammonia-lyase OS=Rhizobium loti GN=hutH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 71/209 (33.97%), Postives = 104/209 (49.76%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA +L   + V  A+  +A +G     D   H L+ H GQIE A  + +++ GS+  E+    H +    +  QD Y LR  PQ +G   +V+R +  ++  E N V DNPLI    + AL GGNF   P+  + D   LA+  IG L   + + LV+   S G+P+ L+    P L+ GF   ++  AA  SE
Sbjct:  195 NGTQFSTAYALAALFEAEVLYQSALVAGALSTDAAKGSDAPFDPRIHLLRKHRGQIETAEALRNLMAGSAIRES----HRVG--DERVQDPYCLRCQPQVMGAALDVLRKAADTLGTEANGVTDNPLIFAEDDTALSGGNFHAEPVAFAADMIALAVCEIGSLSERRIAMLVDPALS-GMPAFLT--PKPGLNSGFMIPQVTAAALVSE 394          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_METNO (Histidine ammonia-lyase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=hutH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LF A  L   + V  A+  +A +G     D   H L+ H GQIE A  +  +L GS    A +  H +    +  QD Y LR  PQ +G   +++R +  ++E E N V+DNPL+     +AL GGNF   P+  + D   LA+  IG L   + + LV+   S+GLP+ L+    P L+ GF   ++  AA  SE
Sbjct:  196 NGTQFSTAYALAGLFGAEDLLRAALVAGALSVDAARGSDTPFDPRIHALRRHRGQIETARALRDLLSGS----AIRASHLVG--DERVQDPYCLRCQPQVMGAALDLLRQAAATLETEANGVSDNPLVFPETGEALSGGNFHAEPVAFAADMIALALCEIGALSERRIALLVDPALSSGLPAFLT--PRPGLNSGFMIPQVTAAALVSE 396          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP3 (Histidine ammonia-lyase OS=Klebsiella pneumoniae (strain 342) GN=hutH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 71/209 (33.97%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA  G     D   H+++   GQI+AAA+  H+L   S +  ++  H    +Q P    Y+LR  PQ +G     IR + + +  E N+V+DNPL+  + N  + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  197 NGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAI--SRSHHNCTKVQDP----YSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIA-LMMDSHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 396          
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_AGRT5 (Histidine ammonia-lyase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hutH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 70/213 (32.86%), Postives = 107/213 (50.23%), Query Frame = 2
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS----SYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT     LA   LF A+     + +  A+  +A  G         H L+ H GQI+A A + ++L+GS    S++E  ++           QD Y +R  PQ  G   +++R   +++E E N+V DNPL+ +S N  + GGNF   P+  + D + LAI  IG +   + + LV+   S GLP+ LS  + P L+ G   AE+  AA  SE
Sbjct:  198 NGTQTSTALALAGLFRAHRAAQAALITGALSTDAAMGSSAPFHPDIHSLRGHKGQIDAGAALRNLLEGSEIRVSHIEGDERV----------QDPYCIRCQPQVDGACLDLLRQVARTLEIEANAVTDNPLV-LSDNSVVSGGNFHAEPVAFAADQTALAICEIGAIAQRRVALLVDPALSYGLPAFLS--KKPGLNSGLMIAEVTSAALMSE 397          
The following BLAST results are available for this feature:
BLAST of CF417508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PALY_RHORB1.911e-3239.63Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
HUTH_METS42.118e-2335.41Histidine ammonia-lyase OS=Methylobacterium sp. (s... [more]
HUTH_MARMM2.118e-2333.97Histidine ammonia-lyase OS=Maricaulis maris (strai... [more]
HUTH_ENT381.373e-2235.41Histidine ammonia-lyase OS=Enterobacter sp. (strai... [more]
HUTH_KLEP73.995e-2234.45Histidine ammonia-lyase OS=Klebsiella pneumoniae s... [more]
HUTH_TREDE5.218e-2233.18Histidine ammonia-lyase OS=Treponema denticola GN=... [more]
HUTH_RHILO6.814e-2233.97Histidine ammonia-lyase OS=Rhizobium loti GN=hutH ... [more]
HUTH_METNO6.814e-2233.97Histidine ammonia-lyase OS=Methylobacterium nodula... [more]
HUTH_KLEP31.518e-2133.97Histidine ammonia-lyase OS=Klebsiella pneumoniae (... [more]
HUTH_AGRT51.983e-2132.86Histidine ammonia-lyase OS=Agrobacterium tumefacie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-438 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417508 ID=CF417508; Name=CF417508; organism=Citrus sinensis; type=EST; length=639bp
TAACGGAACAGGAGTGGGTGCTGGCTTGGCTTCTATTGTTCTTTTTGAGG
CTAATATTTTAACTGTTTTGTCCGAAGTTTTGTCAGCAATTTTTGCGGAA
GCTATGCAAGGAAAGCCTGAGTTTACGGATCATTTGACTCACAAGCTGAA
GCATCACCCTGGACAAATTGAAGCTGCAGCTATAATGGAACATATCTTGG
ATGGTAGCTCTTATGTTGAGGCAGCACAAAAATTCCATGAAATTGACCCT
TTACAGAAGCCTAAGCAAGATCGGTATGCTCTTCGAACTTCACCACAATG
GTTAGGCCCTCAAGCTGAAGTGATTCGAGCATCGACAAAGTCTATTGAGA
GGGAGATTAACTCTGTGAATGATAATCCGTTGATTGATGTTTCAAGGAAC
AAGGCATTACACGGTGGCAATTTCCAGGGCACTCCAATTGGTGTCTCTAT
GGATAATTCAAGATTGGCAATTGCTTCGATTGGGAAACTCATGTTTGCTC
AATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAAT
CTGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGA
AATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCT
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