CF417508

Overview
NameCF417508
Unique NameCF417508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALTY (Histidine ammonia-lyase OS=Salmonella typhimurium GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALSV (Histidine ammonia-lyase OS=Salmonella schwarzengrund (strain CVM19633) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALPC (Histidine ammonia-lyase OS=Salmonella paratyphi C (strain RKS4594) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALNS (Histidine ammonia-lyase OS=Salmonella newport (strain SL254) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALHS (Histidine ammonia-lyase OS=Salmonella heidelberg (strain SL476) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALG2 (Histidine ammonia-lyase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALEP (Histidine ammonia-lyase OS=Salmonella enteritidis PT4 (strain P125109) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALDC (Histidine ammonia-lyase OS=Salmonella dublin (strain CT_02021853) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALCH (Histidine ammonia-lyase OS=Salmonella choleraesuis GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
[Close]
BLAST of CF417508 vs. ExPASy Swiss-Prot
Match: HUTH_SALA4 (Histidine ammonia-lyase OS=Salmonella agona (strain SL483) GN=hutH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 2 
Query:    2 NGTGVGAGLASIVLFEANILTVLSEVLSAIFAEAMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSE 628
            NGT      A   LFEA  L   + V  A+  EA+ G     D   H  +   GQI+ A +  H+L D S+  E+    H++       QD Y+LR  PQ +G     +R + + +  E N+V+DNPL+     + + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L   +N  ++ GF  A++  AA  SE
Sbjct:  196 NGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLV--KNGGVNSGFMIAQVTAAALASE 395
The following BLAST results are available for this feature:
BLAST of CF417508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_SALTY4.883e-2032.86Histidine ammonia-lyase OS=Salmonella typhimurium ... [more]
HUTH_SALSV4.883e-2032.86Histidine ammonia-lyase OS=Salmonella schwarzengru... [more]
HUTH_SALPC4.883e-2032.86Histidine ammonia-lyase OS=Salmonella paratyphi C ... [more]
HUTH_SALNS4.883e-2032.86Histidine ammonia-lyase OS=Salmonella newport (str... [more]
HUTH_SALHS4.883e-2032.86Histidine ammonia-lyase OS=Salmonella heidelberg (... [more]
HUTH_SALG24.883e-2032.86Histidine ammonia-lyase OS=Salmonella gallinarum (... [more]
HUTH_SALEP4.883e-2032.86Histidine ammonia-lyase OS=Salmonella enteritidis ... [more]
HUTH_SALDC4.883e-2032.86Histidine ammonia-lyase OS=Salmonella dublin (stra... [more]
HUTH_SALCH4.883e-2032.86Histidine ammonia-lyase OS=Salmonella choleraesuis... [more]
HUTH_SALA44.883e-2032.86Histidine ammonia-lyase OS=Salmonella agona (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-438 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417508 ID=CF417508; Name=CF417508; organism=Citrus sinensis; type=EST; length=639bp
TAACGGAACAGGAGTGGGTGCTGGCTTGGCTTCTATTGTTCTTTTTGAGG
CTAATATTTTAACTGTTTTGTCCGAAGTTTTGTCAGCAATTTTTGCGGAA
GCTATGCAAGGAAAGCCTGAGTTTACGGATCATTTGACTCACAAGCTGAA
GCATCACCCTGGACAAATTGAAGCTGCAGCTATAATGGAACATATCTTGG
ATGGTAGCTCTTATGTTGAGGCAGCACAAAAATTCCATGAAATTGACCCT
TTACAGAAGCCTAAGCAAGATCGGTATGCTCTTCGAACTTCACCACAATG
GTTAGGCCCTCAAGCTGAAGTGATTCGAGCATCGACAAAGTCTATTGAGA
GGGAGATTAACTCTGTGAATGATAATCCGTTGATTGATGTTTCAAGGAAC
AAGGCATTACACGGTGGCAATTTCCAGGGCACTCCAATTGGTGTCTCTAT
GGATAATTCAAGATTGGCAATTGCTTCGATTGGGAAACTCATGTTTGCTC
AATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAAT
CTGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGA
AATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCT
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