CF417510

Overview
NameCF417510
Unique NameCF417510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 51/157 (32.48%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAH--GYTKGDGLGAEIIGTFVLVYTVFSATD 642
            E+++  F+R+ I+E +A+F++++I      GV    +  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S  RA  Y+  QC G I GA ++ G      Y+  G     ++H       +  G E I TF++V   F +TD
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVT-VPGYQ--GNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTD 209          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 58/171 (33.92%), Postives = 74/171 (43.27%), Query Frame = 1
Query:  196 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKG--------FEGSKNYERLGGGANVVAHG---YTKGDGLGAEIIGTFVLVYTVFSATDAKXTP 657
            F+R G AEF+ T       VL V GV  +     T G  G       AW FG M+   VY   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G  +  G        FEG K+      G  +  +     T  +    E IGT VLV  +F+  D   +P
Sbjct:  309 FFREGFAEFLGTL------VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTPATGGCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSP 471          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  202 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 633
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG L+  ++SL RAV Y V Q LGA+    +++   G     R  G A  +A G      +  E + TF L+Y  ++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGM---RPPGFA--LASGVGDWHAVLLEAVMTFGLMYAYYA 165          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 51/152 (33.55%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  202 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAK 648
            +A +AEF+AT LF++  V + +  S+          G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   + Y V Q LGA     +++     +     G        G ++ +G+  EI+ TF LVYTV+ +A D K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG------VSGISEIEGVVMEIVITFALVYTVYATAADPK 164          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 648
            EL+S SF+RA  AEF AT  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGA+ GA V+  +  +    R     N +  G +       EI  T   V  +F+  D +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDER 152          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  175 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG--ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 633
            GE     F+R  + E + TFLF++I V   M    + TK ST G    A A G  +   V  TAG  ISGGH+NPAVT  L +   ++L R+  Y+  Q L +     +++   G      L    + +A G     G+ AE + TF L++ +++
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYA 158          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  202 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV----GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 633
            RA I+EF+AT +F++    +V+ + K     ST+    G+  +A A    +   V     +SGGH+NPAVTFG L+  ++SL RAV Y   Q LGA+    +++   G     R  G A  +A G   G  +  E + TF  VY  ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGG---ARPPGFA--LASGVGDGHAVLLEAVMTFGFVYAYYA 170          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  163 LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAK 648
            ++ PG LK      A  AEF++T +F++    + M  SK       +  G+   A A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y V Q LG+     +++   G +     G        G +  + L  EI+ TF LVYTV+ +A D K
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPK 166          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  163 LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAK 648
            ++ PG LK      A +AEF++T +F++    + M  SK     +T   G+   A A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y + Q LG+     +++   G       G        G +  + L  EI+ TF LVYTV+ +A D K
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPK 166          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 1
Query:  193 SFYRAGIAEFMATF-LFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAH------GYTKGDGLGAEIIGTFVLVYTVFSATDAK 648
            S  +  +AEF+ TF L L      V+  +  N     +G  G++ AFG  +  + +    ISG HINPAV+ GL  A++   T  + Y+  Q LG I GAGV+    G K    L GG     +      GYT    L  E++ TF+ +  +  +TD +
Sbjct:    2 SLVKRSVAEFIGTFWLVLGGCGAAVLAAAFPNLG---IGFAGVSLAFGLTLLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTDRR 157          
The following BLAST results are available for this feature:
BLAST of CF417510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
BIB_DROME9.511e-1332.48Neurogenic protein big brain OS=Drosophila melanog... [more]
YI7H_SCHPO1.242e-1233.92Uncharacterized membrane protein C977.17 OS=Schizo... [more]
TIP31_MAIZE1.242e-1235.17Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP23_MAIZE1.242e-1233.55Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
MIP_CAVPO1.242e-1233.76Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP43_MAIZE2.119e-1232.26Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP32_MAIZE2.119e-1233.78Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP11_MAIZE2.119e-1232.73Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ORYSJ2.767e-1232.73Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQPZ_GLOVI3.614e-1232.08Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-440 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417510 ID=CF417510; Name=CF417510; organism=Citrus sinensis; type=EST; length=725bp
ATCTTCTTTGAGAGAATAAGAGAGCGAGAGAGAGGTTCATCATCGTCAAT
GGAAGGCAAAGAAGAGGATGTTAAGCTAGGAGCTAACAAGTTCTCAGAGA
GGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGAGCCA
CCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTA
CAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTACATCA
CTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTCCACT
GTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCT
TGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCAGTGA
CCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGAGCTGTCTTC
TACATGGTCATGCAGTGCCTTGGTGCCATCTGTGGTGCTGGTGTTGTCAA
GGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCCAATG
TTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGATTATT
GGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAN
AACGCCAGAGATTCTCATGTCCCTATTTTGGNCCCCCTCCCCATTGGATT
TGCTGTTTTCTTGGTCCACCTGGCC
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