CF417510

Overview
NameCF417510
Unique NameCF417510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  193 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKXT 654
            +F++A  AEF+A  +F+ ++V + +    S      V +  I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGAI GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+K T
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  193 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKXT 654
            +F++A  AEF+A  +F+ ++V + +    S      V +  I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGAI GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+K T
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---NVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 186          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  193 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKXT 654
            +F++A  AEF+A  +F+ +++ + +    +  K   V +  I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGAI GAG++           +GG    + HG  T G GL  E+I TF LV+T+F++ D+K T
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  193 SFYRAGIAEFMATFLFLYITV-LTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKXT 654
            +F++A  AEF+A  +F+ +++  T+    K N     V +  I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGAI GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+K T
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL--PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 59/162 (36.42%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKXTPEI 663
            E+ S +F +A  AEF+AT +F++  + + +         +   I  IA AFG  I  L      +SGGHINPA+T  LL+  ++SL RAVFY+V Q +GAI GAG++ G         L    N + +  T G  +  E+I TF L   +FS+TD++ T  +
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNL--AVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPV 158          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  193 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKXT 654
            +F++A  AEF+A  +F+ +++ + +    +  K   V +  I+  FG  I  +V C   ISGGHINPAVT  ++  R++S+ ++VFY+  QCLGAI GAG++           +GG      HG  + G GL  E+I TF LV+T+F++ D+K T
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRT 183          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKXTPEI 663
            E+ S +F +A  AEF+AT +F++  + + +         +   +  I+ AFG  I  +      +SGGH+NPA+T  LL+  ++SL RAVFY+V Q +GAI GA ++ G         L    N + +  T G  + AE+I TF L   VFS+TD++ T  +
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNL--AVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPV 158          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKXTPEI 663
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ AFG  I  L      +SGGHINPA+T  LL+  ++SL RA+FY+  Q +GAI GAG++           L    N +++  T G  +  E+I TF L   +FS+TD++ T  +
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNL--AVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPV 158          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKXTPEI 663
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ AFG  I  L      +SGGHINPA+T  LL+  ++SL RAVFY+  Q +GAI GAG++           L    N + +  T G  +  E+I TF L   +FS+TD++ T  +
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNL--AVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPV 158          
BLAST of CF417510 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  178 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKXTPEI 663
            E+ S +F +A  AEF+AT +F++  + + +         +   I  IA AFG  I  L      +SGGHINPA+T  LL+  ++SL RA FY+  Q +GAI GAG++ G         L    N + +  T+G  +  E+I TF L   +F++TD++ T  +
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNL--AVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPV 158          
The following BLAST results are available for this feature:
BLAST of CF417510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
AQP4_RAT1.239e-2039.35Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL1.239e-2039.35Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN2.761e-2038.71Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME3.606e-2039.74Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP5_PIG2.337e-1936.42Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_BOVIN2.337e-1937.42Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_SHEEP2.584e-1834.57Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP5_MOUSE4.408e-1833.95Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_RAT7.518e-1834.57Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_HUMAN7.518e-1834.57Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-440 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417510 ID=CF417510; Name=CF417510; organism=Citrus sinensis; type=EST; length=725bp
ATCTTCTTTGAGAGAATAAGAGAGCGAGAGAGAGGTTCATCATCGTCAAT
GGAAGGCAAAGAAGAGGATGTTAAGCTAGGAGCTAACAAGTTCTCAGAGA
GGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGAGCCA
CCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTA
CAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTACATCA
CTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTCCACT
GTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCT
TGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCAGTGA
CCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGAGCTGTCTTC
TACATGGTCATGCAGTGCCTTGGTGCCATCTGTGGTGCTGGTGTTGTCAA
GGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCCAATG
TTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGATTATT
GGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAN
AACGCCAGAGATTCTCATGTCCCTATTTTGGNCCCCCTCCCCATTGGATT
TGCTGTTTTCTTGGTCCACCTGGCC
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