CF417517 | Citrus Genome Database

Overview


Name	CF417517
Unique Name	CF417517
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	639

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5159	contig	Csv1_Contig5159:475..1114.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.659e-36
Identity = 77/161 (47.83%), Postives = 105/161 (65.22%), Query Frame = 3

Query:   12 IGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGT 494
            IG GGFG VYK KL DG+ +A+K+L   S QG+REF  E+  I  + H NLV L G C  G + LLVYE++   SL   L   ++  ++L+W  RRKI IG ARGLA+LH      I+HRD+K++NVLLD+    ++SDFG+A+L     TH+S + +AGT
Sbjct:  630 IGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHIS-TRIAGT 789

HSP 2 Score: 26.5646 bits (57), Expect = 1.659e-36
Identity = 11/33 (33.33%), Postives = 17/33 (51.52%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGK 595
            GY+ PEY      + K DVY +G     + +G+
Sbjct:  791 GYMAPEYAMRGHLTDKADVYSFGIVALEIVHGR 823

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.666e-36
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = 3

Query:   12 IGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGT 494
            +G GGFG+VYK +L  G TVAIK+L   S QG  EF  E++ + K++HRNL  LLGYC  GEE++LVYE++   SL+  L + +K  + L+W  R KI  G ARG+ +LH +    IIHRD+K+SN+LLD +   ++SDFGMAR+     T  +   + GT
Sbjct:  353 LGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVDVVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLFDNEKRRV-LDWQRRYKIIEGIARGILYLHRDSRLTIIHRDLKASNILLDADMHPKISDFGMARIFGVDQTQANTKRIVGT 512

HSP 2 Score: 26.9498 bits (58), Expect = 1.666e-36
Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGK 595
            GY+ PEY      S K DVY +G     +  GK
Sbjct:  514 GYMSPEYAIHGKYSVKSDVYSFGVLVLELITGK 546

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.161e-36
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 3

Query:    6 SLIGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMS 452
            S IG GG+G VYK  L  G  VA+K+    S QG +EF  E+E + ++ HRNLV LLGYC    E++LVYEYM  GSL+D L  + +  + L  A R +IA+GSARG+ +LH    P IIHRD+K SN+LLD     +V+DFG+++L++
Sbjct:  635 SQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQPLSL--ALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADFGISKLIA 781

HSP 2 Score: 35.039 bits (79), Expect = 2.161e-36
Identity = 16/35 (45.71%), Postives = 18/35 (51.43%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGKXP 601
            GYV PEYY S   + K DVY  G  F  +  G  P
Sbjct:  801 GYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRP 835

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.170e-36
Identity = 74/167 (44.31%), Postives = 105/167 (62.87%), Query Frame = 3

Query:   12 IGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPAMSLP 512
            +G GGFG+VYK     G  VA+K+L   SGQG++EF  E+  + K++HRNLV LLGYC  GEE++LVYE++   SL+  L +    G +L+W+ R KI  G ARG+ +LH +    IIHRD+K+ N+LLD +   +V+DFGMAR+     T  +   + GT     P
Sbjct:  350 LGQGGFGEVYKGTFPSGVQVAVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLFDPTMQG-QLDWSRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAP 515

HSP 2 Score: 28.4906 bits (62), Expect = 2.170e-36
Identity = 17/49 (34.69%), Postives = 22/49 (44.90%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANG--KXPTDSADFGDNNLV 637
            GY+ PEY      S K DVY +G     + +G      D  D   +NLV
Sbjct:  511 GYMAPEYAMYGKFSMKSDVYSFGVLVLEIVSGMKNSSLDQMDGSISNLV 559

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.171e-36
Identity = 72/170 (42.35%), Postives = 105/170 (61.76%), Query Frame = 3

Query:    3 DSLIGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPAMSLP 512
            ++ +G GGFG VYK    +G  VA+K+L   SGQGD EF  E+  + +++H+NLV LLG+C  G+E +LVYE++   SL+  + ++ K  + L W  R +I  G ARGL +LH +    IIHRD+K+SN+LLD     +V+DFG ARL  + +T      +AGT     P
Sbjct:  351 ENTLGQGGFGTVYKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEDKRSL-LTWEVRFRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAETKRIAGTRGYMAP 519

HSP 2 Score: 28.4906 bits (62), Expect = 2.171e-36
Identity = 12/33 (36.36%), Postives = 17/33 (51.52%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGK 595
            GY+ PEY      S K DVY +G     + +G+
Sbjct:  515 GYMAPEYLNHGQISAKSDVYSFGVMLLEMISGE 547

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.171e-36
Identity = 74/174 (42.53%), Postives = 108/174 (62.07%), Query Frame = 3

Query:    3 DSLIGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPAMSLPNTIK 524
            ++ IG GGFG VYK KL  G  +A+K+L   SGQG+ EF  E+  + +++HRNLV LLG+C  G+E +LVYE++   SL+  + +++K  + L W  R +I  G ARGL +LH +    IIHRD+K+SN+LLD     +V+DFGMARL +   T      + GT     P  ++
Sbjct:  342 ENKIGQGGFGSVYKGKLPGGEEIAVKRLTRGSGQGEIEFRNEVLLLTRLQHRNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEEK-RLLLTWDMRARIIEGVARGLVYLHEDSQLRIIHRDLKASNILLDAYMNPKVADFGMARLFNMDQTRAVTRKVVGTFGYMAPEYVR 514

HSP 2 Score: 28.1054 bits (61), Expect = 2.171e-36
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGK 595
            GY+ PEY ++   S K DVY +G     +  G+
Sbjct:  506 GYMAPEYVRNRTFSVKTDVYSFGVVLLEMITGR 538

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.816e-36
Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = 3

Query:    6 SLIGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMAR 443
            +LIG GGFG VY+  L DG  VA+K     S QG REF  E+  +  I+H NLVPLLGYC   ++++LVY +M  GSL D L+ +      L+W  R  IA+G+ARGLA+LH      +IHRD+KSSN+LLD +  A+V+DFG ++
Sbjct:  599 TLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSK 744

HSP 2 Score: 34.2686 bits (77), Expect = 2.816e-36
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGKXP 601
            GY+ PEYY++   S K DV+ +G     + +G+ P
Sbjct:  763 GYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREP 797

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.664e-36
Identity = 76/161 (47.20%), Postives = 101/161 (62.73%), Query Frame = 3

Query:   12 IGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGT 494
            +G GGFG VYK  L DG  VA+K L   S QG  +F AE+  I  + HRNLV L G C  GE R+LVYEY+  GSL+  L   K   + L+W+ R +I +G ARGL +LH      I+HRD+K+SN+LLD     ++SDFG+A+L     TH+S + +AGT
Sbjct:  700 LGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKT--LHLDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHIS-TRVAGT 857

HSP 2 Score: 26.9498 bits (58), Expect = 3.664e-36
Identity = 12/37 (32.43%), Postives = 19/37 (51.35%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGKXPTD 607
            GY+ PEY      + K DVY +G     + +G+  +D
Sbjct:  859 GYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSD 895

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.682e-36
Identity = 76/167 (45.51%), Postives = 105/167 (62.87%), Query Frame = 3

Query:   12 IGSGGFGDVYKAKLKDGSTVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPAMSLP 512
            IG GGFG+VYK    +G  VA+K+L   S QG+ EF  E+  + K++HRNLV LLG+   GEER+LVYEYM   SL+ +L +  K  I+L+W  R  I  G ARG+ +LH +    IIHRD+K+SN+LLD +   +++DFGMAR+     T  + S + GT     P
Sbjct:  357 IGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTK-QIQLDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAP 522

HSP 2 Score: 28.8758 bits (63), Expect = 3.682e-36
Identity = 14/45 (31.11%), Postives = 24/45 (53.33%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGKXPTDSADFGDNN 631
            GY+ PEY      S K DVY +G     + +G+    ++ FG+++
Sbjct:  518 GYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGR---KNSSFGESD 559

[Close]

BLAST of CF417517 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 3.708e-36
Identity = 77/180 (42.78%), Postives = 110/180 (61.11%), Query Frame = 3

Query:    3 DSLIGSGGFGDVYKAKLKDGS----------TVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRYGSLEDVLHNQKKVGIKLNWAARRKIAIGSARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPAMSLP 512
            DS++G GGFG V+K  + + S           +A+K+L     QG RE+ AE+  +G++ H NLV L+GYC   E RLLVYE+M  GSLE+ L  +      L+W  R ++A+G+ARGLAFL HN  P +I+RD K+SN+LLD N+ A++SDFG+AR     D     + + GT   + P
Sbjct:   71 DSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFL-HNAQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAP 249

HSP 2 Score: 33.113 bits (74), Expect = 3.708e-36
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 2

Query:  497 GYVPPEYYQSFXCSTKGDVYXYGGSFARVANGKXPTD-SADFGDNNLV 637
            GY  PEY  +   S K DVY +G     + +G+   D +   G++NLV
Sbjct:  245 GYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLV 292

The following BLAST results are available for this feature:

BLAST of CF417517 vs. ExPASy Swiss-Prot

BLAST of CF417517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
Y1534_ARATH	1.659e-36	47.83	Probable LRR receptor-like serine/threonine-protei...	[more]
CRK25_ARATH	1.666e-36	46.58	Cysteine-rich receptor-like protein kinase 25 OS=A...	[more]
Y5374_ARATH	2.161e-36	48.32	Probable LRR receptor-like serine/threonine-protei...	[more]
CRK20_ARATH	2.170e-36	44.31	Putative cysteine-rich receptor-like protein kinas...	[more]
CRK40_ARATH	2.171e-36	42.35	Cysteine-rich receptor-like protein kinase 40 OS=A...	[more]
CRK38_ARATH	2.171e-36	42.53	Cysteine-rich receptor-like protein kinase 38 OS=A...	[more]
NORK_PEA	2.816e-36	48.63	Nodulation receptor kinase OS=Pisum sativum GN=NOR...	[more]
Y1561_ARATH	3.664e-36	47.20	Probable LRR receptor-like serine/threonine-protei...	[more]
CRK6_ARATH	3.682e-36	45.51	Cysteine-rich receptor-like protein kinase 6 OS=Ar...	[more]
NAK_ARATH	3.708e-36	42.78	Probable serine/threonine-protein kinase NAK OS=Ar...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-447 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417517 ID=CF417517; Name=CF417517; organism=Citrus sinensis; type=EST; length=639bp
ATGACAGTCTTATAGGCTCTGGTGGTTTTGGTGATGTATACAAGGCTAAA
CTGAAAGATGGAAGTACTGTAGCTATCAAGAAACTGATACATATCAGCGG
ACAAGGTGATCGGGAATTCACAGCTGAAATGGAAACAATAGGGAAAATCA
AGCACCGGAATCTTGTACCCCTTTTGGGTTATTGCAAGGTAGGAGAAGAG
AGGCTCTTGGTATACGAGTACATGAGGTATGGAAGCTTAGAAGATGTATT
ACACAACCAAAAGAAAGTGGGGATCAAGCTGAACTGGGCAGCACGGAGGA
AGATTGCAATTGGGTCAGCAAGAGGTTTGGCTTTTCTTCATCACAATTGC
ATCCCACACATTATCCACCGGGATATGAAATCGAGCAATGTTCTGCTAGA
CGAAAACTTTGAGGCCAGAGTCTCAGATTTTGGAATGGCAAGACTAATGA
GTGCGATGGATACACATTTGAGTGTCAGTACGCTAGCAGGCACACCGGCT
ATGTCCCTCCCGAATACTATCAAAGCTTTANATGTTCGACGAAAGGCGAT
GTTTACNGTTATGGNGGTAGTTTTGCTCGAGTTGCTAACGGGAAAANGCC
CACAGATTCAGCAGATTTCGGTGACAATAACCTAGTTGG