CF417520

Overview
NameCF417520
Unique NameCF417520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_MOUSE (Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_HUMAN (Protein transport protein Sec61 subunit gamma OS=Homo sapiens GN=SEC61G PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_GADMO (Protein transport protein Sec61 subunit gamma OS=Gadus morhua GN=sec61g PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_CANFA (Protein transport protein Sec61 subunit gamma OS=Canis familiaris GN=SEC61G PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_BOVIN (Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67
[Close]
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_CAEEL (Protein transport protein Sec61 subunit gamma OS=Caenorhabditis elegans GN=emo-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.501e-12
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R F+KDS RLVKRC KPDRKE+ K+A  TAI            KLI IPINNIIVG+
Sbjct:   10 PARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGA 68
The following BLAST results are available for this feature:
BLAST of CF417520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SC61G_MOUSE4.265e-1262.07Protein transport protein Sec61 subunit gamma OS=M... [more]
SC61G_HUMAN4.265e-1262.07Protein transport protein Sec61 subunit gamma OS=H... [more]
SC61G_GADMO4.265e-1262.07Protein transport protein Sec61 subunit gamma OS=G... [more]
SC61G_CANFA4.265e-1262.07Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_BOVIN4.265e-1262.07Protein transport protein Sec61 subunit gamma OS=B... [more]
SC61G_CAEEL9.501e-1259.32Protein transport protein Sec61 subunit gamma OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-450 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417520 ID=CF417520; Name=CF417520; organism=Citrus sinensis; type=EST; length=431bp
ATCCGCTCAGAGATTTCGCAAAAGACAGCTTGCGTCTCGTCAAGAGGTGT
CACAAGCCCGATCGCAAAGAATTCACGAAGGTTGCGTTCCGTACGGCGAT
CGGATTCGTTGTCATGGGATTCGTAGGTTTCTTCGTCAAGTTGATCTTCA
TCCCTATCAACAATATTATTGTTGGATCTGGATAAGGCTGCAGAGTTGCT
GGCTTTGATGATGGAAGTTATCAGCAGATTGATTCACACCCTTCAACGAA
GGAATGAGTTAACCCGTTTAGAATTTTATTAGACAGTACCTCAAATATGC
CTTGAATCTTTTTGAATTAGACTTTATATTTGCTTTTAAGTTGACTTACT
CCGGAAATATTTTACTTTTGTCGAAAATTAGTTTGTTCTTACAGATTGGA
ACTTGCTACGTTAAATCATTTTGTTTACTTT
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