CF417522

Overview
NameCF417522
Unique NameCF417522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP6 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.748e-50
Identity = 109/203 (53.69%), Postives = 146/203 (71.92%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEG-GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR   P++    G   +PTA+EA  IAD + SLF+S  VD+VEL+YTKF+SLV S+PV+ TLLPL P+G         + +++DE FRLTT+ G  TVER+ + +E A     + FEQDP QIL ALLPLYL++Q+LRALQE+ ASELA+RM+AM++A+DNA  L   L++VYN+ RQA IT E+LE+VAGA+AL
Sbjct:  122 RKAGQYFQRREQ-PIEATYSGLEQIPTAQEANDIADQLLSLFLSGTVDRVELVYTKFLSLVASNPVVQTLLPLDPQG---------LASSDDEIFRLTTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAMNSASDNANALVGQLTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJA (ATP synthase gamma chain OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpG PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.281e-49
Identity = 107/202 (52.97%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR       ++    +PTA EA  I D++ S F+SE+VDKVEL+YT+FVSL+ S PV+ +LLPL P           + A +DE F L  + G+ TVER  +    ++  P + FEQDPVQILDALLPLYLN+Q+LRALQE+ ASELA+RM+AMSNA+DNA EL + L + YN+ RQA IT EILE+VAGA+AL
Sbjct:  122 RKAVQYFQRRSAPIAKTYVNLSQIPTAAEAAQIGDELLSAFLSEKVDKVELIYTRFVSLISSRPVVQSLLPLDPTR---------LAARDDEIFNLLVRGGEFTVERSKIVAAVSAPPPDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMSNASDNATELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.853e-49
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEG-GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI-LQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR   P++    G   +PTA+EA  IAD++ SL++SEEVD VEL+YT+F+SLV S PV+ TLLPL P           V A EDE FRLTT+ G+  VER+ +   T    P  + FEQ+P+QILDALLPLYLN+Q+LRALQES ASELA+RM+AM+NA+DNA EL   L++ YN+ RQA IT E+LE+V GA+AL
Sbjct:  122 RKAIQYFQRRDQ-PIEATYGGLEQIPTAQEASEIADELLSLYLSEEVDHVELIYTRFISLVNSRPVVQTLLPLDP--------DALVVAEEDEVFRLTTRGGQFQVERERMERGTPQEMPSDMIFEQNPIQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNASELIGTLTLSYNKARQAAITQELLEVVGGAEAL 316          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJB (ATP synthase gamma chain OS=Synechococcus sp. GN=atpG PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.154e-48
Identity = 106/202 (52.48%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR       ++    +PTA EA  I D + + F+SE+VDKVELLYT+FVSL+ S PV+ +LLPL P           +   +DE FRL  + G+ TVER  V    ++    + FEQDPVQILDALLPLYLN+Q+LRALQE+ ASELA+RM+AM+NA+DNA EL + L + YN+ RQA IT EILE+VAGA+AL
Sbjct:  122 RKAVQYFQRRSAPIAKTYVNLSQIPTAAEAAQIGDQLLAAFLSEKVDKVELLYTRFVSLISSRPVVQSLLPLDPSR---------LATQDDEIFRLLVRGGEFTVERSKVIAAVSAPPQDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMNNASDNASELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_TRIEI (ATP synthase gamma chain OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 101/202 (50.00%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR    ++ +     +PTA  A  +AD++ + F++  +D+VEL++T+F+SL+ S PVI TLLPL P+G         ++  +DE FRLT+K G+  V R+ V     SF   + FEQDP+QILDALLPL+L +Q+LRA QES ASELASRM+AMSNA+DNA EL   L++ YN+ RQA IT EILE+V GA+AL
Sbjct:  122 RKAIQYFQRREVPILNTYDNPEKIPTADNASVVADEILAGFMAGSIDRVELIFTRFISLISSKPVIQTLLPLDPQG---------LEVKDDEIFRLTSKGGEFEVSRETVSAAVKSFPRDMIFEQDPIQILDALLPLFLTNQLLRAWQESSASELASRMTAMSNASDNASELAGTLTLAYNKARQAAITQEILEVVGGANAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.487e-47
Identity = 106/203 (52.22%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEG-GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF  R   PV +   G   +P+A EA  IAD++ SLF+SEEVDK+EL+YT+FVSL+ S PV+ TLLPL P           +   +DE F L T+ GK  VER+ V TE       + FEQDP  IL+ALLPLYL++Q+LRALQE  ASELA+RM+AM+NA+DNA +L K L++ YN+ RQA IT E+ E+VAGA+AL
Sbjct:  122 RKAVQYFQNRQ-APVAKTYAGLEQIPSAAEASDIADELLSLFLSEEVDKIELIYTRFVSLISSQPVVQTLLPLVPEA---------LTNPDDETFNLITRGGKFQVEREKVATEVKELPADMIFEQDPKDILNALLPLYLSNQLLRALQEGAASELAARMTAMNNASDNASDLMKTLTLSYNKARQAAITQELSEVVAGANAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.036e-46
Identity = 106/204 (51.96%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDR--FLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRT-ETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADA 603
            KK   YF  R  +   R  F E   +PT+++A +I  +V + F+SE  D+VE+++TKFVSLV  +P I TLLPL P+G         +  +EDE FRLTTK+ +L +E+D   T E       + FEQ P Q+L+ALLPLYL +Q+LRALQES ASELASRM+AM+NA+DNA EL KNL+I YN+ RQA IT EILE+V GA A
Sbjct:  122 KKAIGYFENRSSLYNIRATFKELEQVPTSEDAASITSEVLAEFLSESTDRVEVIFTKFVSLVSCNPTIQTLLPLDPQG---------IADSEDEIFRLTTKDSQLIIEKDAAPTNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.122e-45
Identity = 105/204 (51.47%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDR--FLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRT-ETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADA 603
            KK   YF  R  +   R  F E   +PT+++A +I  +V + F+SE  D+VE+++TKFVSLV  +P I TLLPL P+G         +  +EDE FRLTTK+ +L +E+D   + E       + FEQ P Q+L+ALLPLYL +Q+LRALQES ASELASRM+AM+NA+DNA EL KNL+I YN+ RQA IT EILE+V GA A
Sbjct:  122 KKAIGYFENRSSLYKIRATFKELEQVPTSEDAASITSEVLAEFLSESTDRVEVIFTKFVSLVSCNPTIQTLLPLDPQG---------IADSEDEIFRLTTKDSQLIIEKDAAPSNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS3 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9311) GN=atpG PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 102/202 (50.50%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI-LQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADA 603
            +K  +YF  R Y     F     +PTA EA +IA ++F+ F+SE  D+VE+++TKF++LV   PV+ TLLPL P+G         +  A+DE FRLTTKEG+L+VE       +    P  + FEQ P Q+L+ALLPLYL +Q+LR+LQES ASELASRM+AM+NA+DNA EL K L++ YN+ RQA IT EILE+V G+ A
Sbjct:  122 RKAISYFTNRNYPIQATFTGLEQVPTADEAGSIASEIFAEFLSETSDRVEIIFTKFINLVSCKPVVQTLLPLDPQG---------IAEADDEIFRLTTKEGRLSVEAGSAPENSQPALPSDIVFEQSPDQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PROM9 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9312) GN=atpG PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.264e-45
Identity = 102/202 (50.50%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    1 KKGNAYFLRRP--YIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVER-DVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 597
            KK   YF  R   YI    F E   +PTAK+++ I  +V + F+SE  D+VE++YTKF++LV   PV+ TLLPL P+G I D N        DE FRLTTK+ KL VE+ ++ ++++      + FEQ P Q+LD+LLPLYL +Q+LRALQES ASELA RM+AM+NA+DNA EL   L++ YN+ RQA IT EILE+V G+
Sbjct:  122 KKAIGYFQNRKDRYIIKTTFKELEQVPTAKDSEGITSEVLAEFLSENADRVEIIYTKFITLVSCAPVVQTLLPLDPQG-IADEN--------DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
The following BLAST results are available for this feature:
BLAST of CF417522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SYNP65.748e-5053.69ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNJA1.281e-4952.97ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_ACAM12.853e-4954.90ATP synthase gamma chain OS=Acaryochloris marina (... [more]
ATPG_SYNJB3.154e-4852.48ATP synthase gamma chain OS=Synechococcus sp. GN=a... [more]
ATPG_TRIEI5.380e-4850.00ATP synthase gamma chain OS=Trichodesmium erythrae... [more]
ATPG_SYNP23.487e-4752.22ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROM15.036e-4651.96ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMT1.122e-4551.47ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS31.914e-4550.50ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROM93.264e-4550.50ATP synthase gamma chain OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-452 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417522 ID=CF417522; Name=CF417522; organism=Citrus sinensis; type=EST; length=727bp
AAGAAGGGTAATGCATATTTCCTTCGTAGGCCTTATATTCCTGTTGATAG
ATTTCTTGAGGGAGGTTCATTACCTACTGCTAAAGAAGCTCAGACTATAG
CAGATGATGTGTTTTCACTCTTTGTTAGTGAAGAAGTTGACAAGGTGGAG
CTTTTATACACAAAGTTTGTGTCTTTGGTTAAGTCTGATCCTGTGATTCA
CACTTTGCTTCCACTATCACCGAGGGGAGAGATTTGTGATGTGAATGGTG
TTTGCGTTGATGCTGCTGAGGATGAGTTCTTTAGATTGACAACTAAGGAA
GGAAAGTTAACTGTTGAGAGAGATGTTGTGAGAACTGAGACTGCTTCTTT
CTCACCCATTTTGCAATTTGAGCAGGACCCAGTTCAGATTCTTGATGCTC
TTTTGCCCCTCTATCTAAACAGCCAGATCTTGAGGGCTTTGCAGGAATCC
TTAGCCAGCGAGCTTGCTTCAAGAATGAGTGCCATGAGCAATGCAACTGA
TAATGCAATGGAGTTGAAGAAGAACTTGTCTATCGTCTACAACAGGCAGC
GCCAGGCCAAAATTACTGGAGAGATTTTGGAGATTGTTGCTGGTGCCGAT
GCTTTAGTGTAAAGAATTATGCGGGGCTTCTCACATCTTACTCAATTGTC
CATCTTTGTAGGCAATTTTACGACTGTTTCCCTTATTGATTCAAATATGC
TTGGTTTACCAGGAGTTATTCAGAATT
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