CF417522

Overview
NameCF417522
Unique NameCF417522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SALCH (ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  136 VDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +DK+ ++  KF++ +   P I  LLPL               A+ED+  +    +                      +E DP  +LD LL  Y+ SQ+ + + E+LASE A+RM AM  ATDN   L K L +VYN+ RQA IT E+ EIV+GA A+
Sbjct:  165 LDKLYIVSNKFINTMSQVPTITQLLPLP--------------ASEDDDLKRKAWD--------------------YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SALAR (ATP synthase gamma chain OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  136 VDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +DK+ ++  KF++ +   P I  LLPL               A+ED+  +    +                      +E DP  +LD LL  Y+ SQ+ + + E+LASE A+RM AM  ATDN   L K L +VYN+ RQA IT E+ EIV+GA A+
Sbjct:  165 LDKLYIVSNKFINTMSQVPTITQLLPLP--------------ASEDDDLKRKAWD--------------------YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SALA4 (ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  136 VDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +DK+ ++  KF++ +   P I  LLPL               A+ED+  +    +                      +E DP  +LD LL  Y+ SQ+ + + E+LASE A+RM AM  ATDN   L K L +VYN+ RQA IT E+ EIV+GA A+
Sbjct:  165 LDKLYIVSNKFINTMSQVPTITQLLPLP--------------ASEDDDLKRKAWD--------------------YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_KLEP7 (ATP synthase gamma chain OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 56/157 (35.67%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  136 VDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +DK+ ++  KF++ +   P I  LLPL P  E  D+     D                                   +E DP  +LD LL  Y+ SQ+ + + E+LASE A+RM AM  ATDN   L K L +VYN+ RQA IT E+ EIV+GA A+
Sbjct:  165 LDKLYVVSNKFINTMSQVPTITQLLPL-PASEDADLKRKSWDYL---------------------------------YEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_COLMA (ATP synthase gamma chain OS=Colwellia maris GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  133 EVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            E+D++ ++Y KFV+ +  +P I  LLPL                ++DE          ++   D +            +E D   +LD LL  Y+ SQ+ + + E++A E ASRM +M  ATDNA +L  +L +VYN+ RQA IT E+ EIVAGA A+
Sbjct:  164 EIDRLHVVYNKFVNTMTQEPTIDQLLPLPK--------------SDDE---------AISHRWDYI------------YEPDANSLLDQLLVRYIESQVYQGVVENIACEQASRMVSMKAATDNAGDLIDDLQLVYNKARQAAITQELGEIVAGAAAV 286          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_BORPE (ATP synthase gamma chain OS=Bordetella pertussis GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  121 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            ++   +D + +  T+FV+ +K +PV   LLPLS        NG+     +D F     + G  T+ +        S+  I  +E D   ++D LL  Y+   + +A+ E++ASE ++RM AM +A+DNA ++  +L +VYN+ RQA IT EI EIV GA A+
Sbjct:  160 YLEGRIDALYVATTRFVNTMKQEPVFLRLLPLS--------NGL-----DDPF-----QSGVETLAKTAEIKSDYSWDYI--YEPDAKSVIDDLLQRYVEGLLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNKTRQAAITKEISEIVGGAAAV 301          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_THIDA (ATP synthase gamma chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  121 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            ++   +D + L+Y +F++ +K +P +  LLPL+                       +T+E  L    D +            +E D   ++DA+L  Y+ S + + + E++ASE ++RM AM  A+DNA  +   L +VYN+ RQA IT E+ EIVAGA A+
Sbjct:  161 YLEGRIDALYLVYNRFINTMKQEPTLTQLLPLAKME--------------------STEEASLKTHWDYI------------YEPDAKPVVDAMLMRYIESLVYQGVAENIASEQSARMVAMKAASDNAKNVIGELKLVYNKTRQAAITKELSEIVAGAAAV 290          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PSEPF (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 57/201 (28.36%), Postives = 94/201 (46.77%), Query Frame = 1
Query:    4 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            KG A+F       V      G  P+  +       +   ++   +D++ ++  KF++ +   P +  L+PL                       + T + +L    D +            +E D  ++LD L+  Y+ SQ+ +A+ E+ A+E A+RM AM NATDNA +L  +L ++YN+ RQA IT EI EIV GA A+
Sbjct:  121 KGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPL-----------------------VATPDQELKHHWDYL------------YEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PSEFS (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain SBW25) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 57/201 (28.36%), Postives = 94/201 (46.77%), Query Frame = 1
Query:    4 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            KG A+F       V      G  P+  +       +   ++   +D++ ++  KF++ +   P +  L+PL                       + T + +L    D +            +E D  ++LD L+  Y+ SQ+ +A+ E+ A+E A+RM AM NATDNA +L  +L ++YN+ RQA IT EI EIV GA A+
Sbjct:  121 KGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEGRIDRLSVVSNKFINTMTQQPTVEQLIPL-----------------------VATPDQELKHHWDYL------------YEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_METI4 (ATP synthase gamma chain OS=Methylacidiphilum infernorum (isolate V4) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 52/172 (30.23%), Postives = 90/172 (52.33%), Query Frame = 1
Query:   76 TAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPV--QILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEI 585
            T +EA+ I   +   ++ +E+D + + Y+ FV+ +   P+   + P+S                      L  KE          + E+     +L F  +P   ++L++LLP Y++ +I +A+ ++LASE ++RM AM +AT+NA  L ++LS+ YN+ RQ  IT EILEI
Sbjct:  143 TFREAKRIGHFLIEKYLHKEIDAISIAYSHFVNPLIQKPIYRRIAPISK-------------------VELVKKE----------KAESPPAESVLPFNFEPSAEELLESLLPFYIHWEIYQAILDNLASEHSARMVAMKSATENAKSLLQDLSLEYNKARQESITKEILEI 285          
The following BLAST results are available for this feature:
BLAST of CF417522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SALCH6.004e-1535.03ATP synthase gamma chain OS=Salmonella choleraesui... [more]
ATPG_SALAR6.004e-1535.03ATP synthase gamma chain OS=Salmonella arizonae (s... [more]
ATPG_SALA46.004e-1535.03ATP synthase gamma chain OS=Salmonella agona (stra... [more]
ATPG_KLEP76.004e-1535.67ATP synthase gamma chain OS=Klebsiella pneumoniae ... [more]
ATPG_COLMA6.004e-1534.81ATP synthase gamma chain OS=Colwellia maris GN=atp... [more]
ATPG_BORPE6.004e-1534.57ATP synthase gamma chain OS=Bordetella pertussis G... [more]
ATPG_THIDA7.841e-1530.86ATP synthase gamma chain OS=Thiobacillus denitrifi... [more]
ATPG_PSEPF7.841e-1528.36ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_PSEFS7.841e-1528.36ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_METI47.841e-1530.23ATP synthase gamma chain OS=Methylacidiphilum infe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-452 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417522 ID=CF417522; Name=CF417522; organism=Citrus sinensis; type=EST; length=727bp
AAGAAGGGTAATGCATATTTCCTTCGTAGGCCTTATATTCCTGTTGATAG
ATTTCTTGAGGGAGGTTCATTACCTACTGCTAAAGAAGCTCAGACTATAG
CAGATGATGTGTTTTCACTCTTTGTTAGTGAAGAAGTTGACAAGGTGGAG
CTTTTATACACAAAGTTTGTGTCTTTGGTTAAGTCTGATCCTGTGATTCA
CACTTTGCTTCCACTATCACCGAGGGGAGAGATTTGTGATGTGAATGGTG
TTTGCGTTGATGCTGCTGAGGATGAGTTCTTTAGATTGACAACTAAGGAA
GGAAAGTTAACTGTTGAGAGAGATGTTGTGAGAACTGAGACTGCTTCTTT
CTCACCCATTTTGCAATTTGAGCAGGACCCAGTTCAGATTCTTGATGCTC
TTTTGCCCCTCTATCTAAACAGCCAGATCTTGAGGGCTTTGCAGGAATCC
TTAGCCAGCGAGCTTGCTTCAAGAATGAGTGCCATGAGCAATGCAACTGA
TAATGCAATGGAGTTGAAGAAGAACTTGTCTATCGTCTACAACAGGCAGC
GCCAGGCCAAAATTACTGGAGAGATTTTGGAGATTGTTGCTGGTGCCGAT
GCTTTAGTGTAAAGAATTATGCGGGGCTTCTCACATCTTACTCAATTGTC
CATCTTTGTAGGCAATTTTACGACTGTTTCCCTTATTGATTCAAATATGC
TTGGTTTACCAGGAGTTATTCAGAATT
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