CF417522

Overview
NameCF417522
Unique NameCF417522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_MYCSJ (ATP synthase gamma chain OS=Mycobacterium sp. (strain JLS) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  358 ILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +  FE     + DALLP Y++++I  A+ E+ ASE ASR  AM +A+DNA +L K+L+++ NR+RQ++IT EI EIV GA+AL
Sbjct:  221 LFSFEPSAETLFDALLPRYVSTRIFAAMLEAAASESASRRRAMKSASDNADDLIKDLTLMANRERQSQITQEISEIVGGANAL 303          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_MARAV (ATP synthase gamma chain OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 60/199 (30.15%), Postives = 93/199 (46.73%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 597
            +KG ++F       V      G  P+A +       +   FV  ++D++ L+  +FV+ +   P    LLPL P G+                      + ++  + D +            +E D   ILD L+P Y+ SQ+ + + E+LA E A+RM AM +ATDNA  +   L + YN+ RQA IT EI EIV+GA
Sbjct:  120 QKGASFFRNYGGNVVAAVTHLGDSPSADQLIGSVKVMLDSFVEGKIDRLFLISNEFVNTMTQSPKALQLLPL-PEGD----------------------DEEIGHQWDYI------------YEPDSRPILDGLMPRYIESQVYQGVVENLACEQAARMIAMKSATDNAGSIIDELQLAYNKARQAAITQEISEIVSGA 283          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_ALISL (ATP synthase gamma chain OS=Aliivibrio salmonicida (strain LFI1238) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = 1
Query:   64 GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            G  P+ +E       +   +   ++D++ ++  KF++ +  +P I  LLPL                +EDE  +               RT    +     +E +P  +LDALL  Y+ SQ+ + + E+LA E  +RM AM  ATDNA ++   L +VYN+ RQ+ IT E+ EIV+GA A+
Sbjct:  141 GDKPSLEELIGTVGVMLKKYDEGQLDRLYVVNNKFINTMVQEPTIDQLLPLPK--------------SEDEAMK---------------RTHAWDYI----YEPEPKPLLDALLIRYVESQVYQGVVENLACEHVARMIAMKAATDNAGDIIDELQLVYNKARQSAITQELSEIVSGASAV 288          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_ALHEH (ATP synthase gamma chain OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  121 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +   ++D++ L++  FV+ +  +     LLP+ P                         E ++    D +   +AS            ++LD +L  Y+ SQ+ + + E++A E+A+RM AM +ATDNA E+  NL +VYN+ RQA IT E+ EIVAGA+A+
Sbjct:  161 YTEGKIDRLYLVHNDFVNTMSQEAATRRLLPVEP-----------------------VDEEEMLENWDYIYEPSAS------------ELLDDVLMRYIESQVYQGVVENVACEMAARMVAMKSATDNAGEIIDNLQLVYNKARQAAITQELSEIVAGANAV 287          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_VIBCM (ATP synthase gamma chain OS=Vibrio cholerae serotype O1 (strain M66-2) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  133 EVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            E+D++ L++ +FV+ +   P I  LLPL P+ +                              D+ R     +     +E +P  +LDALL  ++ SQ+ + + E+LA E A+RM AM  ATDNA  L  +L +VYN+ RQA IT E+ EIV GA A+
Sbjct:  164 ELDRLYLVFNQFVNTMVQKPKIDQLLPL-PKSD----------------------------SEDMQRDHMWDYI----YEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_VIBCH (ATP synthase gamma chain OS=Vibrio cholerae GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  133 EVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            E+D++ L++ +FV+ +   P I  LLPL P+ +                              D+ R     +     +E +P  +LDALL  ++ SQ+ + + E+LA E A+RM AM  ATDNA  L  +L +VYN+ RQA IT E+ EIV GA A+
Sbjct:  164 ELDRLYLVFNQFVNTMVQKPKIDQLLPL-PKSD----------------------------SEDMQRDHMWDYI----YEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_VIBC3 (ATP synthase gamma chain OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  133 EVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            E+D++ L++ +FV+ +   P I  LLPL P+ +                              D+ R     +     +E +P  +LDALL  ++ SQ+ + + E+LA E A+RM AM  ATDNA  L  +L +VYN+ RQA IT E+ EIV GA A+
Sbjct:  164 ELDRLYLVFNQFVNTMVQKPKIDQLLPL-PKSD----------------------------SEDMQRDHMWDYI----YEPEPKPLLDALLLRFIESQVYQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGAAAV 288          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PSEE4 (ATP synthase gamma chain OS=Pseudomonas entomophila (strain L48) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  121 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            ++   +D++ ++  KF++ +   P +  L+PL                       + T +  L    D +            +E D  ++LD L+  Y+ SQ+ +A+ E+ A+E A+RM AM NATDNA +L   L ++YN+ RQA IT EI EIV GA A+
Sbjct:  160 YLDGRIDRLSVVSNKFINTMTQKPTVEQLVPL-----------------------VATPDQDLKHHWDYL------------YEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISELQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAE (ATP synthase gamma chain OS=Pseudomonas aeruginosa GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  367 FEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +E D   +LD LL  Y+ SQ+ +A+ E+ A E A+RM AM NATDNA EL  +L ++YN+ RQA IT EI EIV GA A+
Sbjct:  207 YEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAB (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  367 FEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +E D   +LD LL  Y+ SQ+ +A+ E+ A E A+RM AM NATDNA EL  +L ++YN+ RQA IT EI EIV GA A+
Sbjct:  207 YEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
The following BLAST results are available for this feature:
BLAST of CF417522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_MYCSJ3.892e-1449.40ATP synthase gamma chain OS=Mycobacterium sp. (str... [more]
ATPG_MARAV3.892e-1430.15ATP synthase gamma chain OS=Marinobacter aquaeolei... [more]
ATPG_ALISL3.892e-1430.39ATP synthase gamma chain OS=Aliivibrio salmonicida... [more]
ATPG_ALHEH3.892e-1430.86ATP synthase gamma chain OS=Alkalilimnicola ehrlic... [more]
ATPG_VIBCM5.083e-1434.18ATP synthase gamma chain OS=Vibrio cholerae seroty... [more]
ATPG_VIBCH5.083e-1434.18ATP synthase gamma chain OS=Vibrio cholerae GN=atp... [more]
ATPG_VIBC35.083e-1434.18ATP synthase gamma chain OS=Vibrio cholerae seroty... [more]
ATPG_PSEE45.083e-1430.86ATP synthase gamma chain OS=Pseudomonas entomophil... [more]
ATPG_PSEAE5.083e-1452.50ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEAB5.083e-1452.50ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-452 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417522 ID=CF417522; Name=CF417522; organism=Citrus sinensis; type=EST; length=727bp
AAGAAGGGTAATGCATATTTCCTTCGTAGGCCTTATATTCCTGTTGATAG
ATTTCTTGAGGGAGGTTCATTACCTACTGCTAAAGAAGCTCAGACTATAG
CAGATGATGTGTTTTCACTCTTTGTTAGTGAAGAAGTTGACAAGGTGGAG
CTTTTATACACAAAGTTTGTGTCTTTGGTTAAGTCTGATCCTGTGATTCA
CACTTTGCTTCCACTATCACCGAGGGGAGAGATTTGTGATGTGAATGGTG
TTTGCGTTGATGCTGCTGAGGATGAGTTCTTTAGATTGACAACTAAGGAA
GGAAAGTTAACTGTTGAGAGAGATGTTGTGAGAACTGAGACTGCTTCTTT
CTCACCCATTTTGCAATTTGAGCAGGACCCAGTTCAGATTCTTGATGCTC
TTTTGCCCCTCTATCTAAACAGCCAGATCTTGAGGGCTTTGCAGGAATCC
TTAGCCAGCGAGCTTGCTTCAAGAATGAGTGCCATGAGCAATGCAACTGA
TAATGCAATGGAGTTGAAGAAGAACTTGTCTATCGTCTACAACAGGCAGC
GCCAGGCCAAAATTACTGGAGAGATTTTGGAGATTGTTGCTGGTGCCGAT
GCTTTAGTGTAAAGAATTATGCGGGGCTTCTCACATCTTACTCAATTGTC
CATCTTTGTAGGCAATTTTACGACTGTTTCCCTTATTGATTCAAATATGC
TTGGTTTACCAGGAGTTATTCAGAATT
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