CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    6 FGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 254
            FGG DP H+ G   ++PVTK+GYWQ  +  + + G+T  +CS GC AI D+GTSL+ GP   I Q+  AIGA+   G  + +C TL
Sbjct:  235 FGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQV-GDTVMFCSEGCQAIVDTGTSLITGPPKKIKQLQEAIGATPMDGEYAVDCATL 319          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            +FGG D + Y G+ TY+ V +K YWQF+M  V +    T +C+ GC AIAD+GTSL+AGP + +T IN AIG + +++ E
Sbjct:  224 IFGGSDSNKYTGDFTYLSVDRKAYWQFKMDSVKVGD--TEFCNNGCEAIADTGTSLIAGPVSEVTAINKAIGGTPIMNGE 301          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 254
            VFGG D   + G+  +VPVT +GYWQ ++ +V I+GE   +CS GC AI D+GTSL+ GP++ I Q+ + IGAS   G    +C  L
Sbjct:  228 VFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQINGEVL-FCSGGCQAIVDTGTSLITGPSSDIVQLQNIIGASAANGDYEVDCSVL 313          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  M  + I+GET   C+  C A+ D+GTSLLAGPT+ I++I   IGAS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSHEGYWQITMDSITINGETIA-CADSCQAVVDTGTSLLAGPTSAISKIQSYIGAS 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    6 FGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 254
            FGG DP H+ G   ++PVTK+ YWQ  +  + + G+T  +CS GC AI D+GTSL+ GP   I  +  AIGA+   G  + +C TL
Sbjct:  234 FGGYDPSHFSGSLNWIPVTKQAYWQIALDGIQV-GDTVMFCSEGCQAIVDTGTSLITGPPDKIKHLQEAIGATPIDGEYAVDCATL 318          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 254
            +FGG D  H+ G   +VPVTK+ YWQ  + ++ + G T  +CS GC AI D+GTSL+ GP+  I Q+ +AIGA+   G  + EC  L
Sbjct:  237 IFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAVECANL 322          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + +DGET   C+  C AI D+GTSLLAGPT+ I+ I   IGAS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITLDSITMDGETIA-CADSCQAIVDTGTSLLAGPTSAISNIQSYIGAS 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FG +D  +Y G   +VPV+ +GYWQ  +  + ++GE+   CS GC AI D+GTSLLAGPTT I+ I   IGAS
Sbjct:  212 IFGDIDSSYYSGSLNWVPVSVEGYWQITVDSITMNGESIA-CSDGCQAIVDTGTSLLAGPTTAISNIQSYIGAS 284          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            VFGG D   + G+  +VPVT +GYWQ ++ ++ I+GE   +CS GC AI D+GTS++ GP++ I Q+   IGAS
Sbjct:  228 VFGGFDASRFSGQLNWVPVTNQGYWQIQLDNIQINGEVV-FCSGGCQAIVDTGTSMITGPSSDIVQLQSIIGAS 300          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            + GG+D  +Y G   +VPV+ +GYWQ  +  + +DGET   CS GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  225 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 297          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CATE_RAT2.027e-1646.51Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
ASPP_AEDAE7.703e-1647.50Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATEA_XENLA2.241e-1545.98Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
PEPA1_RABIT3.823e-1550.00Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_MOUSE3.823e-1544.19Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CATE_HUMAN3.823e-1544.83Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
PEPA3_RABIT6.521e-1550.00Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA_BOVIN8.517e-1550.00Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
CATEB_XENLA8.517e-1547.30Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
PEPA_PIG1.453e-1450.00Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
back to top