CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  M  V I+GET   C+  C AI D+GTSLL GPT+ I+ I   IGAS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIA-CADSCQAIVDTGTSLLTGPTSAISNIQSYIGAS 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  M  V I+GET   C+  C AI D+GTSLL GPT+ I+ I   IGAS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIA-CADSCQAIVDTGTSLLTGPTSAISNIQSYIGAS 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    6 FGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 254
            FGG D  H+ G   +VPVTK+GYWQ  + ++ + G    +C  GC AI D+GTSL+ GP+  I Q+  AIGA+   G  + EC+ L
Sbjct:  233 FGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVGGSPM-FCPEGCQAIVDTGTSLITGPSDKIIQLQAAIGATPMDGEYAVECENL 317          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    6 FGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGV---ISQECKTL 254
            FGG DP H+ G   +VPVTK+ YWQ  +  + + G++  +CS GC AI D+GTSL+ GP   I Q+  A+GA+ V    S +C  L
Sbjct:  228 FGGYDPSHFSGSLNWVPVTKQAYWQIALDGIQV-GDSVMFCSEGCQAIVDTGTSLITGPPGKIKQLQEALGATYVDEGYSVQCANL 312          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  V ++G+    CS GC AI D+GTSLLAGPT  I  I   IGAS
Sbjct:  226 MFGGIDSSYYSGNLNWVPVSVEGYWQITVDSVTMNGQAIA-CSDGCQAIVDTGTSLLAGPTNAIANIQSYIGAS 298          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPVT +GYWQ  +  + ++GE    C+ GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  228 IFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 300          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + ++G+T   C+ GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGKTIA-CAKGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 300          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + ++GE    C+ GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 300          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + ++GE    C+ GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 300          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + ++GE    C+ GC AI D+GTSLL GPT+ I  I   IGAS
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 300          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PEPA4_RABIT1.453e-1451.35Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT1.453e-1451.35Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_RABIT1.453e-1444.19Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
CATE_CAVPO1.897e-1444.19Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
PEPA_CANFA2.478e-1450.00Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPA_HUMAN3.236e-1448.65Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
PEPA4_MACFU5.520e-1447.30Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_MACMU7.210e-1447.30Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA2_MACFU7.210e-1447.30Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA1_MACFU7.210e-1447.30Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
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