CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VPV+ +GYWQ  +  + ++GE    C+ GC AI D+GTSLL+GPT+ I  I   IGAS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSAEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLSGPTSPIANIQSYIGAS 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS----GVISQECKTL 254
            +FGG+D  +Y G   +VP++ +GYWQ  +  + ++G++   C+ GC AI D+GTSLL+GPT  I  I   IGAS    G ++  C ++
Sbjct:  227 MFGGIDSSYYTGSLNWVPLSSEGYWQITVDSITMNGQSIA-CNGGCQAIVDTGTSLLSGPTNAIANIQSKIGASQNSQGQMAVSCSSI 313          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            VFGG+D  ++ G   ++PV+ +GYWQ  M  ++++ +    CS+GC AI D+GTSL+AGP + I  I  A+GA+
Sbjct:  227 VFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQEIA-CSSGCQAIIDTGTSLVAGPASDINDIQSAVGAN 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST-GCNAIADSGTSLLAGPTTIITQINHAIGA 221
            VFGGVD + Y GE T+VPVT++ YWQ  + D LI  + +G+CS+ GC  I D+GTSLL  P   ++++   IGA
Sbjct:  229 VFGGVDKNLYTGEITWVPVTQELYWQITIDDFLIGDQASGWCSSQGCQGIVDTGTSLLVMPAQYLSELLQTIGA 302          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG DP +Y G+  YVPVT++ YWQ  M  + I  + T  C  GC AI D+GTSL+ GP   +  +  AIGA  +I  E
Sbjct:  232 LLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQLT-LCKDGCEAIVDTGTSLITGPPAEVRALQKAIGAIPLIQGE 310          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            VFGGVD   Y G+  + PVT++ YWQ  +   LI G+ TG+CS GC AI D+GTSLL  P   ++ +  A GA
Sbjct:  227 VFGGVDNSLYTGQIFWTPVTQELYWQIGVEQFLIGGQATGWCSQGCQAIVDTGTSLLTVPQQYLSALQQATGA 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC-STGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            VFGGVD + Y GE T++PVT++ YWQ  + D LI  + +G+C S+GC  I D+GTSLL  P   + ++   IGA
Sbjct:  229 VFGGVDENLYTGELTWIPVTQELYWQITIDDFLIGNQASGWCSSSGCQGIVDTGTSLLVMPAQYLNELLQTIGA 302          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS----GVISQECKTL 254
            +FGGVD   Y G+  + PVT++ YWQ  + + LI G+ TG+C  GC AI D+GTSLL  P   ++ +  A GA     G ++  C ++
Sbjct:  227 IFGGVDNSLYTGQIFWAPVTQELYWQIGVEEFLIGGQATGWCQQGCQAIVDTGTSLLTVPQQFMSALQQATGAQQDQYGQLAVNCNSI 314          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGK 272
            +FGGVD   Y+G+  + PVT++ YWQ  + + LI G+ +G+CS GC AI D+GTSLL  P   ++ +  A GA     QE     DQYG+
Sbjct:  227 IFGGVDNSLYQGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSQGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE-----DQYGQ 306          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  +Y G   +VP++ +GYWQ  +  + ++G+    CS  C AI D+GTSLL+GP   I  I  +IGAS
Sbjct:  227 IFGGIDSSYYTGNLNWVPLSSEGYWQITVDSITMNGQAIA-CSGSCQAIVDTGTSLLSGPNNAIANIQKSIGAS 299          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PEPA_CALJA9.416e-1447.30Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPA_SORUN1.606e-1339.77Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PEPE_CHICK2.740e-1343.24Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPC_RAT3.578e-1348.65Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
CATD_CLUHA3.578e-1343.75Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
PEPC_SORUN4.673e-1347.95Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
PEPC_MOUSE4.673e-1347.30Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPC_SUNMU6.103e-1339.77Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
PEPC_RHIFE7.971e-1343.33Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
PEPA_SUNMU7.971e-1343.24Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
back to top